RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 FTH1P02794 183 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 ENO2P09104 434 aaPredicted RBP16.56■□□□□ 0.24
LDLR-206ENST00000557958 ETV3P41162 512 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 EIF2DP41214 584 aaKnown RBP16.56■□□□□ 0.24
LDLR-206ENST00000557958 GRIA2P42262 883 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 WASP42768 502 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 AGTR2P50052 363 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 SLC25A3Q00325 362 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 ZNF234Q14588 700 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 HABP4Q5JVS0 413 aaKnown RBP16.56■□□□□ 0.24
LDLR-206ENST00000557958 HENMT1Q5T8I9 393 aaKnown RBP16.56■□□□□ 0.24
LDLR-206ENST00000557958 RFLNAQ6ZTI6 216 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 Q6ZVL8 140 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 PARS2Q7L3T8 475 aaKnown RBP16.56■□□□□ 0.24
LDLR-206ENST00000557958 DDHD1Q8NEL9 900 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 CFAP61Q8NHU2 1237 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 P2RY13Q9BPV8 354 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 TRIM54Q9BYV2 358 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 DCLRE1BQ9H816 532 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 EFCAB1Q9HAE3 211 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 RNPEPL1Q9HAU8 725 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 DENND4AQ7Z401 1863 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 BRWD1Q9NSI6 2320 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 OTCP00480 354 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 B4GALNT1Q00973 533 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 RALGDSQ12967 914 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 STX5Q13190 355 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 ACOX1Q15067 660 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 PLEKHS1Q5SXH7 462 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 TLDC1Q6P9B6 456 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 FBXL19Q6PCT2 694 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 TTC23LQ6PF05 361 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 LARP4Q71RC2 724 aaKnown RBP eCLIP16.55■□□□□ 0.24
LDLR-206ENST00000557958 KYQ8NBH2 561 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 VPS35Q96QK1 796 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 SERPINI1Q99574 410 aa16.55■□□□□ 0.24
LDLR-206ENST00000557958 TSR3Q9UJK0 312 aaKnown RBP16.55■□□□□ 0.24
LDLR-206ENST00000557958 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.55■□□□□ 0.24
LDLR-206ENST00000557958 C1QTNF3-AMACRE9PGA6 284 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 PSMD12O00232 456 aaPredicted RBP16.54■□□□□ 0.24
LDLR-206ENST00000557958 WNT9AO14904 365 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 PIP5K1BO14986 540 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 C8GP07360 202 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 AOAHP28039 575 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 PIK3CGP48736 1102 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 NUDT2P50583 147 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 C9orf64Q5T6V5 341 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 LIPIQ6XZB0 460 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 PIP4K2CQ8TBX8 421 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 UBTD2Q8WUN7 234 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 SCAMP4Q969E2 229 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 MARK4Q96L34 752 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 ACOX2Q99424 681 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 RIOK2Q9BVS4 552 aaKnown RBP16.54■□□□□ 0.24
LDLR-206ENST00000557958 RIC8BQ9NVN3 520 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 CACNA2D2Q9NY47 1150 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 WWOXQ9NZC7 414 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 SUN2Q9UH99 717 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 PTBP2Q9UKA9 531 aaKnown RBP16.54■□□□□ 0.24
LDLR-206ENST00000557958 PPM1HQ9ULR3 514 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 PRPF19Q9UMS4 504 aaKnown RBP16.54■□□□□ 0.24
LDLR-206ENST00000557958 ANGPTL3Q9Y5C1 460 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 KIF26AQ9ULI4 1882 aaPredicted RBP16.54■□□□□ 0.24
LDLR-206ENST00000557958 PPP6CO00743 305 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 NARSO43776 548 aaKnown RBP16.54■□□□□ 0.24
LDLR-206ENST00000557958 IL9P15248 144 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 LBPP18428 481 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 ITGAXP20702 1163 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 TIE1P35590 1138 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 ARL1P40616 181 aaPredicted RBP16.54■□□□□ 0.24
LDLR-206ENST00000557958 SP140Q13342 867 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 ART3Q13508 389 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 FASTKQ14296 549 aaKnown RBP16.54■□□□□ 0.24
LDLR-206ENST00000557958 KPNB1Q14974 876 aaKnown RBP16.54■□□□□ 0.24
LDLR-206ENST00000557958 PON2Q15165 354 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 SMAD2Q15796 467 aaKnown RBP16.54■□□□□ 0.24
LDLR-206ENST00000557958 C1orf146Q5VVC0 180 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 EGFLAMQ63HQ2 1017 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 CYP2U1Q7Z449 544 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 TECPR1Q7Z6L1 1165 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 SYVN1Q86TM6 617 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 DEFB107AQ8IZN7 70 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 BTN2A2Q8WVV5 523 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 ATP6V1E2Q96A05 226 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 AP2M1Q96CW1 435 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 TUBGCP3Q96CW5 907 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 MRPL1Q9BYD6 325 aaKnown RBP16.54■□□□□ 0.24
LDLR-206ENST00000557958 ABCG8Q9H221 673 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 TMEM245Q9H330 911 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 PRDM6Q9NQX0 595 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 PIAS3Q9Y6X2 628 aa16.54■□□□□ 0.24
LDLR-206ENST00000557958 AIM2O14862 343 aa16.53■□□□□ 0.24
LDLR-206ENST00000557958 NUAK1O60285 661 aa16.53■□□□□ 0.24
LDLR-206ENST00000557958 PEX11AO75192 247 aa16.53■□□□□ 0.24
LDLR-206ENST00000557958 ENTPD5O75356 428 aa16.53■□□□□ 0.24
LDLR-206ENST00000557958 GUCA1CO95843 209 aa16.53■□□□□ 0.24
LDLR-206ENST00000557958 EPHX1P07099 455 aa16.53■□□□□ 0.24
LDLR-206ENST00000557958 ANXA5P08758 320 aa16.53■□□□□ 0.24
LDLR-206ENST00000557958 MPC1LP0DKB6 136 aa16.53■□□□□ 0.24
LDLR-206ENST00000557958 CCR7P32248 378 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms