RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PIK3CGP48736 1102 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 PKNOX1P55347 436 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 CLCQ05315 142 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 ELAVL3Q14576 367 aaKnown RBP12.45□□□□□ -0.42
SHMT2-229ENST00000557348 PTPRRQ15256 657 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 PCBP2Q15366 365 aaKnown RBP eCLIP12.45□□□□□ -0.42
SHMT2-229ENST00000557348 TGFBIQ15582 683 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 FNDC3BQ53EP0 1204 aaKnown RBP12.45□□□□□ -0.42
SHMT2-229ENST00000557348 LDLRAP1Q5SW96 308 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 GPRC6AQ5T6X5 926 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 DHRS4L2Q6PKH6 230 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 ZNF554Q86TJ5 538 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 TERB1Q8NA31 727 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 PDPRQ8NCN5 879 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 RSPRY1Q96DX4 576 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 PRR11Q96HE9 360 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-229ENST00000557348 MPP4Q96JB8 637 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 LRRC3BQ96PB8 259 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 VPS35Q96QK1 796 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 OR52B2Q96RD2 323 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 OARD1Q9Y530 152 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 A0A1B0GVG6 124 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 C16orf96A6NNT2 1141 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 CDC7O00311 574 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 SDHDO14521 159 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 AZIN1O14977 448 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 CBFA2T3O75081 653 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 GPC4O75487 556 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 CRCPO75575 148 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 COX4I1P13073 169 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 ARSAP15289 507 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 TIMP2P16035 220 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 UGT1A6P19224 532 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 UGT1A1P22309 533 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 UGT1A4P22310 534 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 UGT1A3P35503 534 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 UGT1A5P35504 534 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 MMP12P39900 470 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 PBX2P40425 430 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 SP140Q13342 867 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 SQLEQ14534 574 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 ATP13A5Q4VNC0 1218 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 TCEAL5Q5H9L2 206 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 ATAT1Q5SQI0 421 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 KANK2Q63ZY3 851 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 CES5AQ6NT32 575 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 NEK10Q6ZWH5 1172 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 ZNF765Q7L2R6 523 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 KBTBD6Q86V97 674 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 ERI1Q8IV48 349 aaKnown RBP12.45□□□□□ -0.42
SHMT2-229ENST00000557348 RIPOR3Q96MK2 946 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 ZNF382Q96SR6 550 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 SLC30A3Q99726 388 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 ZNF385DQ9H6B1 395 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 WDR55Q9H6Y2 383 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-229ENST00000557348 CERS4Q9HA82 394 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 MID1IP1Q9NPA3 183 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 PCDH12Q9NPG4 1184 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 SUN2Q9UH99 717 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 BLOC1S6Q9UL45 172 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 PAIP2BQ9ULR5 123 aaKnown RBP12.45□□□□□ -0.42
SHMT2-229ENST00000557348 SH3GLB1Q9Y371 365 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 C15orf38-AP3S2A0A0A6YYH1 394 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 C1QTNF3-AMACRE9PGA6 284 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 NEMP1O14524 444 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 UBDO15205 165 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 CDK14O94921 469 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 TRIM16O95361 564 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 ESRRBO95718 433 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 FTH1P02794 183 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 UROSP10746 265 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 ATP1B2P14415 290 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-229ENST00000557348 FCARP24071 287 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 TPP2P29144 1249 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-229ENST00000557348 CCR10P46092 362 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 CCR3P51677 355 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 STX1BP61266 288 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 TUBA4AP68366 448 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 CDKL1Q00532 357 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 RUNX3Q13761 415 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 PLEKHS1Q5SXH7 462 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 SULT1C3Q6IMI6 304 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 C16orf89Q6UX73 402 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 CHSY3Q70JA7 882 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 CYP2U1Q7Z449 544 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 ARPINQ7Z6K5 226 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 PELI3Q8N2H9 469 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 TCAIMQ8N3R3 496 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 DDHD1Q8NEL9 900 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 UBTD2Q8WUN7 234 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 RAB7BQ96AH8 199 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 ELSPBP1Q96BH3 223 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 ITPKCQ96DU7 683 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 C19orf60Q96EN9 201 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 TRIM54Q9BYV2 358 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 SHCBP1LQ9BZQ2 653 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 ZCCHC2Q9C0B9 1178 aaKnown RBP12.44□□□□□ -0.42
SHMT2-229ENST00000557348 RBM38Q9H0Z9 239 aaKnown RBP12.44□□□□□ -0.42
SHMT2-229ENST00000557348 ZBTB26Q9HCK0 441 aa12.44□□□□□ -0.42
SHMT2-229ENST00000557348 MRPL40Q9NQ50 206 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms