RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 SLC9C2Q5TAH2 1124 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 EXOC8Q8IYI6 725 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 PSPC1Q8WXF1 523 aaKnown RBP4.72□□□□□ -1.65
PRPF39-209ENST00000556353 ST8SIA4Q92187 359 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 PIGBQ92521 554 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 IGSF8Q969P0 613 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 RRNAD1Q96FB5 475 aaKnown RBP4.72□□□□□ -1.65
PRPF39-209ENST00000556353 NR1H4Q96RI1 486 aaPredicted RBP4.72□□□□□ -1.65
PRPF39-209ENST00000556353 FSD1Q9BTV5 496 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 LRMDAQ9H2I8 198 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 TCP11L1Q9NUJ3 509 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 POLKQ9UBT6 870 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 PXDNLA1KZ92 1463 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 ARFGEF2Q9Y6D5 1785 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 C10orf71Q711Q0 1435 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 IGSF1Q8N6C5 1336 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 FER1L6Q2WGJ9 1857 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 EIF3CLB5ME19 914 aaKnown RBP4.71□□□□□ -1.66
PRPF39-209ENST00000556353 FAM90A26D6RGX4 464 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 ANKRD28O15084 1053 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 TBX6O95947 436 aaPredicted RBP4.71□□□□□ -1.66
PRPF39-209ENST00000556353 CSF2RAP15509 400 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 MLLT10P55197 1068 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 RUNX1T1Q06455 604 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 TBX2Q13207 712 aaPredicted RBP4.71□□□□□ -1.66
PRPF39-209ENST00000556353 EIF4A2Q14240 407 aaKnown RBP4.71□□□□□ -1.66
PRPF39-209ENST00000556353 HSP90AB4PQ58FF6 505 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 CXorf66Q5JRM2 361 aaPredicted RBP4.71□□□□□ -1.66
PRPF39-209ENST00000556353 TSSK4Q6SA08 328 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 ZNF354CQ86Y25 554 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 ADSSL1Q8N142 457 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 ADAD2Q8NCV1 583 aaKnown RBP4.71□□□□□ -1.66
PRPF39-209ENST00000556353 OR14L1PQ8NHC6 308 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 SLC44A1Q8WWI5 657 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 SLC13A4Q9UKG4 626 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 MKLN1Q9UL63 735 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 KCNK7Q9Y2U2 307 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 CAPN7Q9Y6W3 813 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 WDR90Q96KV7 1748 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 ATP10DQ9P241 1426 aa4.71□□□□□ -1.66
PRPF39-209ENST00000556353 LAMB4A4D0S4 1761 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 PLEKHG2Q9H7P9 1386 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 OR5K3A6NET4 321 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 ERI2A8K979 691 aaKnown RBP4.7□□□□□ -1.66
PRPF39-209ENST00000556353 PTMAP06454 111 aaKnown RBP4.7□□□□□ -1.66
PRPF39-209ENST00000556353 HSPA5P11021 654 aaKnown RBP4.7□□□□□ -1.66
PRPF39-209ENST00000556353 UGT1A1P22309 533 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 CHRNB4P30926 498 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 ACVR2BQ13705 512 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 CDC73Q6P1J9 531 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 INO80CQ6PI98 192 aaPredicted RBP4.7□□□□□ -1.66
PRPF39-209ENST00000556353 PAPD4Q6PIY7 484 aaKnown RBP4.7□□□□□ -1.66
PRPF39-209ENST00000556353 KRTAP7-1Q8IUC3 87 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 PHF21AQ96BD5 680 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 LUZP4Q9P127 313 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 ABI3Q9P2A4 366 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 OR14J1Q9UGF5 321 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 GJD2Q9UKL4 321 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 ARHGAP26Q9UNA1 814 aa4.7□□□□□ -1.66
PRPF39-209ENST00000556353 TNRC6CQ9HCJ0 1690 aaKnown RBP4.7□□□□□ -1.66
PRPF39-209ENST00000556353 KDM3BQ7LBC6 1761 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 CIDEAO60543 219 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 PDE9AO76083 593 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 NKX2-2O95096 273 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 NR2F2P24468 414 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 TNNT2P45379 298 aaPredicted RBP4.69□□□□□ -1.66
PRPF39-209ENST00000556353 DRG2P55039 364 aaKnown RBP4.69□□□□□ -1.66
PRPF39-209ENST00000556353 KRTCAP3Q53RY4 240 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 TRPT1Q86TN4 253 aaKnown RBP4.69□□□□□ -1.66
PRPF39-209ENST00000556353 MYPOPQ86VE0 399 aaPredicted RBP4.69□□□□□ -1.66
PRPF39-209ENST00000556353 ARMC8Q8IUR7 673 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 GPATCH11Q8N954 259 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 ABHD8Q96I13 439 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 SIL1Q9H173 461 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 WASH6PQ9NQA3 447 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 PCDHB16Q9NRJ7 776 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 LRRFIP2Q9Y608 721 aaKnown RBP4.69□□□□□ -1.66
PRPF39-209ENST00000556353 MAU2Q9Y6X3 613 aa4.69□□□□□ -1.66
PRPF39-209ENST00000556353 CENPFP49454 3210 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 TNRC18O15417 2968 aaPredicted RBP4.68□□□□□ -1.66
PRPF39-209ENST00000556353 NUP98P52948 1817 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 SLX4Q8IY92 1834 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 A0A0G2JLW4 131 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 BAG4O95429 457 aaKnown RBP4.68□□□□□ -1.66
PRPF39-209ENST00000556353 EPHA8P29322 1005 aaPredicted RBP4.68□□□□□ -1.66
PRPF39-209ENST00000556353 RARSP54136 660 aaKnown RBP4.68□□□□□ -1.66
PRPF39-209ENST00000556353 KRT71Q3SY84 523 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 TECRLQ5HYJ1 363 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 C15orf39Q6ZRI6 1047 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 PIWIL4Q7Z3Z4 852 aaKnown RBP4.68□□□□□ -1.66
PRPF39-209ENST00000556353 CPXCR1Q8N123 301 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 CNPY4Q8N129 248 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 ESX1Q8N693 406 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 UTP15Q8TED0 518 aaKnown RBP4.68□□□□□ -1.66
PRPF39-209ENST00000556353 ARHGEF26Q96DR7 871 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 NEUROD6Q96NK8 337 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 PAIP1Q9H074 479 aaKnown RBP4.68□□□□□ -1.66
PRPF39-209ENST00000556353 PANK3Q9H999 370 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 SLC52A3Q9NQ40 469 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 DLGAP2Q9P1A6 1054 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms