RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 RHBDF1Q96CC6 855 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 TUBGCP3Q96CW5 907 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 SERPINI1Q99574 410 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 EGFL8Q99944 293 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 NOL11Q9H8H0 719 aaKnown RBP25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 EBF2Q9HAK2 575 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 SUN2Q9UH99 717 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 BTRCQ9Y297 605 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 PTGDR2Q9Y5Y4 395 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 ST14Q9Y5Y6 855 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 KIAA1549LQ6ZVL6 1849 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 OR4F21O95013 312 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 C8GP07360 202 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 PRR35P0CG20 571 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 HLA-EP13747 358 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 GNAZP19086 355 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 OPRD1P41143 372 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 MTTPP55157 894 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 ERVPABLB-1P60509 514 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 CDKL1Q00532 357 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 ELP6Q0PNE2 266 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 ELAVL3Q14576 367 aaKnown RBP25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 C18orf21Q32NC0 220 aaPredicted RBP25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 HOMEZQ8IX15 550 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 ARRDC3Q96B67 414 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 CD244Q9BZW8 370 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 FBRSL1Q9HCM7 1045 aaKnown RBP25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 WWOXQ9NZC7 414 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 FADS2P1A8MWK0 482 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 OR7A17O14581 309 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 KRT36O76013 467 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 GUCA1CO95843 209 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 OTCP00480 354 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 FTH1P02794 183 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 SNRPB2P08579 225 aaKnown RBP25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 GPX3P22352 226 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 HSPA7P48741 367 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 MRPL19P49406 292 aaKnown RBP25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 HYAL1Q12794 435 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 ACOX1Q15067 660 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 GSTA3Q16772 222 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 NEK10Q6ZWH5 1172 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 DET1Q7L5Y6 550 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 CYP2U1Q7Z449 544 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 YAF2Q8IY57 180 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 COQ10AQ96MF6 247 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 FAM129BQ96TA1 746 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 SLC25A23Q9BV35 468 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 MRPL1Q9BYD6 325 aaKnown RBP25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 ZNF576Q9H609 170 aa25.86■■□□□ 1.73
CCDC88C-205ENST00000553403 WNT9AO14904 365 aa25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 SLC16A5O15375 505 aa25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 EIF2DP41214 584 aaKnown RBP25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 GRB7Q14451 532 aa25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 WLSQ5T9L3 541 aa25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 MYLK4Q86YV6 388 aaPredicted RBP25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 OR52B6Q8NGF0 335 aa25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 PPP1R16AQ96I34 528 aa25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 TMEM79Q9BSE2 394 aa25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 SLC12A9Q9BXP2 914 aa25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 RIC8BQ9NVN3 520 aa25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 COL4A3Q01955 1670 aa25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 PIKFYVEQ9Y2I7 2098 aa25.85■■□□□ 1.73
CCDC88C-205ENST00000553403 TBC1D3BA6NDS4 549 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 H0Y3Z8 333 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 LINC01565O15544 149 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 SGTAO43765 313 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 ANP32DO95626 131 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 ANXA5P08758 320 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 HGFP14210 728 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 CCNG1P51959 295 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 SP140Q13342 867 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 GRIN2CQ14957 1233 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 RCN1Q15293 331 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 LETMD1Q6P1Q0 360 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 BNC2Q6ZN30 1099 aaPredicted RBP25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 GLYATL1Q969I3 302 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 AP2M1Q96CW1 435 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 DTD2Q96FN9 168 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 WDR41Q9HAD4 459 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 OPTCQ9UBM4 332 aa25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 MBD1Q9UIS9 605 aaPredicted RBP25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 PRRC2BQ5JSZ5 2229 aaKnown RBP25.84■■□□□ 1.73
CCDC88C-205ENST00000553403 RFXAPO00287 272 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 SPINT1O43278 529 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 PDE5AO76074 875 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 GJA4P35212 333 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 GCKP35557 465 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 FBXL19Q6PCT2 694 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 SERPINA13PQ6UXR4 307 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 ZNF765Q7L2R6 523 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 MIER2Q8N344 545 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 TCAIMQ8N3R3 496 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 CDYL2Q8N8U2 506 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 ATP6V1E2Q96A05 226 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 TRIM54Q9BYV2 358 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 IPPKQ9H8X2 491 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 CCDC167Q9P0B6 97 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 STX18Q9P2W9 335 aaKnown RBP25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 THAP10Q9P2Z0 257 aaPredicted RBP25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms