RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 CCDC88CQ9P219 2028 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 FER1L5A0AVI2 2057 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 A0A1W2PQJ5 194 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 C9J4A7 227 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 IPO13O94829 963 aaKnown RBP12.54□□□□□ -0.4
VPS29-211ENST00000553128 ST6GAL1P15907 406 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 VCLP18206 1134 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 CDH3P22223 829 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 HTR1EP28566 365 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 PBLDP30039 288 aaPredicted RBP12.54□□□□□ -0.4
VPS29-211ENST00000553128 HADHAP40939 763 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 TSFMP43897 325 aaKnown RBP12.54□□□□□ -0.4
VPS29-211ENST00000553128 PREPP48147 710 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 SOX8P57073 446 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 DMPKQ09013 629 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 CDC16Q13042 620 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 SLC9A5Q14940 896 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 BOLA3Q53S33 107 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 NCBP2-AS2Q69YL0 99 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 IRF2BP2Q7Z5L9 587 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 AMZ2Q86W34 360 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 LRRC49Q8IUZ0 686 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 PARP9Q8IXQ6 854 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 NXPE1Q8N323 547 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 RASGEF1AQ8N9B8 481 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 NEK11Q8NG66 645 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 DNAJB14Q8TBM8 379 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 PPP4R1Q8TF05 950 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 RELTQ969Z4 430 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 CNDP1Q96KN2 507 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 WWP1Q9H0M0 922 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 SLC24A2Q9UI40 661 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 POMT2Q9UKY4 750 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 PADI2Q9Y2J8 665 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 SPO11Q9Y5K1 396 aa12.54□□□□□ -0.4
VPS29-211ENST00000553128 NIPBLQ6KC79 2804 aaeCLIP12.53□□□□□ -0.4
VPS29-211ENST00000553128 OR2AG2A6NM03 316 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 PEX12O00623 359 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 HCRTR1O43613 425 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 JRKO75564 520 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 CTSBP07858 339 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 UMODP07911 640 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 COX6B1P14854 86 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 PVRP15151 417 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 CCNCP24863 283 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 SLC25A11Q02978 314 aaKnown RBP12.53□□□□□ -0.4
VPS29-211ENST00000553128 XRCC4Q13426 336 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 ZNF169Q14929 603 aaPredicted RBP12.53□□□□□ -0.4
VPS29-211ENST00000553128 ZNF630Q2M218 657 aaPredicted RBP12.53□□□□□ -0.4
VPS29-211ENST00000553128 FKBP15Q5T1M5 1219 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 CDKAL1Q5VV42 579 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 ARMC6Q6NXE6 501 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 SPNS3Q6ZMD2 512 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 BNC2Q6ZN30 1099 aaPredicted RBP12.53□□□□□ -0.4
VPS29-211ENST00000553128 B4GALNT4Q76KP1 1039 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 BEND7Q8N7W2 519 aaPredicted RBP12.53□□□□□ -0.4
VPS29-211ENST00000553128 CNTD1Q8N815 330 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 OR4E2Q8NGC2 313 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 GDAP1Q8TB36 358 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 CCDC120Q96HB5 630 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 BTBD6Q96KE9 485 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 C12orf66Q96MD2 445 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 IP6K3Q96PC2 410 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 GBP5Q96PP8 586 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 VPS35Q96QK1 796 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 DHRS4Q9BTZ2 278 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 GPR63Q9BZJ6 419 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 SLC7A5P2Q9GIP4 190 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 ATP13A2Q9NQ11 1180 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 MYO1AQ9UBC5 1043 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 CDYLQ9Y232 598 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 SEC16AO15027 2179 aa12.53□□□□□ -0.4
VPS29-211ENST00000553128 E7EQ34 232 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 KCNK1O00180 336 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 PRICKLE3O43900 615 aaPredicted RBP12.52□□□□□ -0.41
VPS29-211ENST00000553128 UGT1A9O60656 530 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 FTLP02792 175 aaPredicted RBP12.52□□□□□ -0.41
VPS29-211ENST00000553128 UGT1A6P19224 532 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 HLA-DPA1P20036 260 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 AGXTP21549 392 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 UGT1A1P22309 533 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 UGT1A4P22310 534 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 FOLR3P41439 243 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 OTUD4Q01804 1114 aaKnown RBP12.52□□□□□ -0.41
VPS29-211ENST00000553128 SRSF11Q05519 484 aaKnown RBP12.52□□□□□ -0.41
VPS29-211ENST00000553128 ADCY2Q08462 1091 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 SLC10A2Q12908 348 aaPredicted RBP12.52□□□□□ -0.41
VPS29-211ENST00000553128 ZBTB17Q13105 803 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 GTF2H3Q13889 308 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 PAFAH1B3Q15102 231 aaKnown RBP12.52□□□□□ -0.41
VPS29-211ENST00000553128 IFI16Q16666 785 aaKnown RBP12.52□□□□□ -0.41
VPS29-211ENST00000553128 TIGD7Q6NT04 549 aaPredicted RBP12.52□□□□□ -0.41
VPS29-211ENST00000553128 TMEM220Q6QAJ8 160 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 IGFL2Q6UWQ7 119 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 CDHR3Q6ZTQ4 885 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 MRGPRGQ86SM5 289 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 CARFQ8N187 725 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 CATSPER1Q8NEC5 780 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 OR2Y1Q8NGV0 311 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 TSGA13Q96PP4 275 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms