RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ASCL5Q7RTU5 278 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 ADIPOR2Q86V24 386 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 C11orf74Q86VG3 221 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CAND1Q86VP6 1230 aaKnown RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 ANKRD13BQ86YJ7 626 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CAMK1DQ8IU85 385 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 PSTKQ8IV42 348 aaKnown RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CARNMT1Q8N4J0 409 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CPSF7Q8N684 471 aaKnown RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 PQLC3Q8N755 202 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 MFSD2AQ8NA29 543 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 OR52K2Q8NGK3 314 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 RAB2BQ8WUD1 216 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CAPSLQ8WWF8 208 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 LMLNQ96KR4 655 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 TCF12Q99081 682 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 RMND5AQ9H871 391 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 ZSCAN32Q9NX65 697 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 ELOVL2Q9NXB9 296 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 INTS6Q9UL03 887 aaKnown RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 ST14Q9Y5Y6 855 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 A0A1W2PQF6 199 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 FAM72CH0Y354 149 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 PSMD11O00231 422 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 APOL1O14791 398 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 RGS13O14921 159 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 APRTP07741 180 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 SLC2A3P11169 496 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 ENDOUP21128 410 aaKnown RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 MZF1P28698 734 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 ARL4AP40617 200 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 GRIA3P42263 894 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 TRPC1P48995 793 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 MAPK10P53779 464 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 MERTKQ12866 999 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 MPP7Q5T2T1 576 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 FAM72AQ5TYM5 149 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 FAM72DQ6L9T8 149 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 ABRAXAS1Q6UWZ7 409 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 FAM72BQ86X60 149 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 CHPFQ8IZ52 775 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 TTC30BQ8N4P2 665 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 PLD5Q8N7P1 536 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 CNTD1Q8N815 330 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 HJURPQ8NCD3 748 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 MDGA1Q8NFP4 955 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 OR7G1Q8NGA0 311 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 OR13F1Q8NGS4 319 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 AGR3Q8TD06 166 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 CYB5D2Q8WUJ1 264 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 SLCO4A1Q96BD0 722 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 DUS3LQ96G46 650 aaKnown RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 SH3YL1Q96HL8 342 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 CSPG4P5Q96PW8 444 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 EBNA1BP2Q99848 306 aaKnown RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF670Q9BS34 389 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 TPSD1Q9BZJ3 242 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 CIPCQ9C0C6 399 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 PCDHAC1Q9H158 963 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 IRF2BPLQ9H1B7 796 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 RAD21L1Q9H4I0 556 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 WDR55Q9H6Y2 383 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 TMEM216Q9P0N5 145 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 OR12D3Q9UGF7 316 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 PSME2Q9UL46 239 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 RAD54BQ9Y620 910 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 TCRBV3S1A0A5B6 114 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 A8MU76 341 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 F5H5T6 163 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 H7C0C1 242 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 EEF2KO00418 725 aaKnown RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 DCLK1O15075 740 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 LILRB5O75023 590 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 CNTN5O94779 1100 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 MAP3K6O95382 1288 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 CPNE6O95741 557 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 PRKCGP05129 697 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 ENO2P09104 434 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 BMP2P12643 396 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 MATN1P21941 496 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 TGM1P22735 817 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 NR4A1P22736 598 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 NTSR1P30989 418 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 IL12RB1P42701 662 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 ATP5OP48047 213 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 AIF1P55008 147 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 PSME3P61289 254 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 LMAN2Q12907 356 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 TRAP1Q12931 704 aaKnown RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF234Q14588 700 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 LPAL2Q16609 132 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 PGS1Q32NB8 556 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 FUT11Q495W5 492 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 ALFQ53S48 1182 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 LDLRAP1Q5SW96 308 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 TTC23LQ6PF05 361 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 NUDT18Q6ZVK8 323 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 CHST9Q7L1S5 443 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 KIAA0907Q7Z7F0 614 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF683Q8IZ20 524 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms