RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CCDC71Q8IV32 467 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 KLHDC8BQ8IXV7 354 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 PGBD5Q8N414 524 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 POC5Q8NA72 575 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 OR52B6Q8NGF0 335 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 OR10A6Q8NH74 314 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 GPR152Q8TDT2 470 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 OSCP1Q8WVF1 389 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 BHMTQ93088 406 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 AURKBQ96GD4 344 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ATOH8Q96SQ7 321 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SPON2Q9BUD6 331 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SARS2Q9NP81 518 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 AIG1Q9NVV5 245 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 OPTCQ9UBM4 332 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 FAM50BQ9Y247 325 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 EIF3LQ9Y262 564 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 MED16Q9Y2X0 877 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 IPPQ9Y573 584 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ARL5AQ9Y689 179 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 J3KR12 359 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 UPK1BO75841 260 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 OR4Q2P0C623 313 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PRR35P0CG20 571 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 RAP2AP10114 183 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 G6PDP11413 515 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DARSP14868 501 aaKnown RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 HTR1EP28566 365 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TGFBR2P37173 567 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 LIPAP38571 399 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PNPLA4P41247 253 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CDKN1CP49918 316 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CLCNKBP51801 687 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 IL5RAQ01344 420 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 IL1RL1Q01638 556 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SCAPQ12770 1279 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DOC2BQ14184 412 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CLCA4Q14CN2 919 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PTPRRQ15256 657 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TAF1CQ15572 869 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TSNQ15631 228 aaKnown RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 NPTX1Q15818 432 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CCDC58Q4VC31 144 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 Q5BKY6 102 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF691Q5VV52 312 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PPP2R2DQ66LE6 453 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 ALKAL1Q6UXT8 129 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CEP68Q76N32 757 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 GDPD3Q7L5L3 318 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TAS2R42Q7RTR8 314 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PLEKHH3Q7Z736 793 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 GATAD2AQ86YP4 633 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 AFAP1L2Q8N4X5 818 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PJA1Q8NG27 643 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 LILRB4Q8NHJ6 448 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TMEM40Q8WWA1 233 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 LGALS12Q96DT0 336 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CCDC126Q96EE4 140 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 FCRL5Q96RD9 977 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 C16orf70Q9BSU1 422 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 LRRC3Q9BY71 257 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 NFKBIZQ9BYH8 718 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 RASSF1Q9NS23 344 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 RGS18Q9NS28 235 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TBC1D14Q9P2M4 693 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 VPS4AQ9UN37 437 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 N6AMT1Q9Y5N5 214 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 POLR2AP24928 1970 aaKnown RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SSC5DA1L4H1 1573 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SLC12A8A0AV02 714 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DEAF1O75398 565 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CELF2O95319 508 aaKnown RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 ENO2P09104 434 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF37AP17032 561 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PTPN2P17706 415 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 GGT1P19440 569 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DNAJB1P25685 340 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SERPINB1P30740 379 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DCTP40126 519 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 THPOP40225 353 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CD86P42081 329 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PPP5CP53041 499 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DSC2Q02487 901 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 ILF2Q12905 390 aaKnown RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DUSP28Q4G0W2 176 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 C6orf136Q5SQH8 315 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PM20D1Q6GTS8 502 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PAQR3Q6TCH7 311 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 Q6ZPB1 254 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DET1Q7L5Y6 550 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 P2RY8Q86VZ1 359 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DCP2Q8IU60 420 aaKnown RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 HID1Q8IV36 788 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SLC22A9Q8IVM8 553 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TTC30BQ8N4P2 665 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 LRRC52Q8N7C0 313 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CDYL2Q8N8U2 506 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 GOLM1Q8NBJ4 401 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 OR13C4Q8NGS5 318 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms