RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 FNIP2Q9P278 1114 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 TDRD15B5MCY1 1934 aaKnown RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 FAM92AA1XBS5 289 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 TMEM247A6NEH6 219 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 PTGES3LE9PB15 166 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 GPR39O43194 453 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 XPNPEP2O43895 674 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 KLK8O60259 260 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 NIPSNAP2O75323 286 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 TULP3O75386 442 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 DEAF1O75398 565 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 ANXA6P08133 673 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 RAP2AP10114 183 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 ODC1P11926 461 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 RHOQP17081 205 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 GGT1P19440 569 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 ALDH4A1P30038 563 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 CD6P30203 668 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 GGT5P36269 586 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 GRIK1P39086 918 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 RGRP47804 291 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 RPS3AP61247 264 aaKnown RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 ISL1P61371 349 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 NRG1Q02297 640 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 KIAA0040Q15053 153 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 RBBP7Q16576 425 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 RFTN2Q52LD8 501 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 RAP1GAP2Q684P5 730 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 FBXL22Q6P050 247 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 TAF2Q6P1X5 1199 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 MSRB3Q8IXL7 192 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 C8orf59Q8N0T1 100 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 CADM3Q8N126 398 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 PARP8Q8N3A8 854 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 TMCO5AQ8N6Q1 288 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 SIDT2Q8NBJ9 832 aaKnown RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 OR10Q1Q8NGQ4 319 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 GPR152Q8TDT2 470 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 EEF1AKMT1Q8WVE0 214 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 FIG4Q92562 907 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 HDAC2Q92769 488 aaKnown RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 ABHD8Q96I13 439 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 MAGED4Q96JG8 741 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 B3GALT6Q96L58 329 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF347Q96SE7 839 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 CGREF1Q99674 301 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 HEPHQ9BQS7 1158 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 OSBPL10Q9BXB5 764 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 C1QTNF3Q9BXJ4 246 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 MROQ9BYG7 248 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 ZYG11BQ9C0D3 744 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 AKIP1Q9NQ31 210 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 HPS4Q9NQG7 708 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 SACM1LQ9NTJ5 587 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 TMEM45AQ9NWC5 275 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 TMEM248Q9NWD8 314 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 KIAA1522Q9P206 1035 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 WARS2Q9UGM6 360 aaKnown RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 ENPP5Q9UJA9 477 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF232Q9UNY5 417 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 PDE10AQ9Y233 779 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 TRIM17Q9Y577 477 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 PMF1-BGLAPU3KQ54 211 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 CHD5Q8TDI0 1954 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 GRXCR2A6NFK2 248 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 C16orf96A6NNT2 1141 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 IQCF5A8MTL0 148 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 G3V2T6 193 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 SLC1A7O00341 560 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 MGEA5O60502 916 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 B4GALT3O60512 393 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 UGT2B11O75310 529 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 CYP11A1P05108 521 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 UGT2B4P06133 528 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 PFKLP17858 780 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 OGNP20774 298 aaKnown RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 LSM3P62310 102 aaKnown RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 PRKG2Q13237 762 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 PTGR1Q14914 329 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 DDR2Q16832 855 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 PTPRNQ16849 979 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 GTDC1Q4AE62 458 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF362Q5T0B9 420 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 C1QTNF12Q5T7M4 302 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 TTC23Q5W5X9 447 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 OVOS1Q6IE37 1185 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 PSAPL1Q6NUJ1 521 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 PRR23BQ6ZRT6 265 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 GPRIN3Q6ZVF9 776 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 EFL1Q7Z2Z2 1120 aaKnown RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 ZDHHC13Q8IUH4 622 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 SCN4BQ8IWT1 228 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 CHPFQ8IZ52 775 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 MDGA1Q8NFP4 955 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 PJA1Q8NG27 643 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 OR4K2Q8NGD2 314 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 OR10A6Q8NH74 314 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 NDNFQ8TB73 568 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 CNIH3Q8TBE1 160 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 BRSK1Q8TDC3 778 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms