RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 PLCL1Q15111 1095 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 PCSK7Q16549 785 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 C3AR1Q16581 482 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 MEA1Q16626 185 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 PARP15Q460N3 678 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 RPS26P11Q5JNZ5 115 aaPredicted RBP4.65□□□□□ -1.67
LIMS1-214ENST00000542845 ZFYVE27Q5T4F4 411 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 MANEALQ5VSG8 457 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 C1orf189Q5VU69 101 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 FCRL6Q6DN72 434 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 TRNP1Q6NT89 227 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 ARMC6Q6NXE6 501 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 CRTC3Q6UUV7 619 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 ADAMTSL4Q6UY14 1074 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 B4GALNT4Q76KP1 1039 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 TECPR1Q7Z6L1 1165 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 BIVMQ86UB2 503 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 ZDHHC17Q8IUH5 632 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 TMEM151BQ8IW70 566 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 TRIM42Q8IWZ5 723 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.65□□□□□ -1.67
LIMS1-214ENST00000542845 CCDC185Q8N715 623 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 DNAAF3Q8N9W5 541 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 DNAJB8Q8NHS0 232 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 CA5BP1Q8WTZ4 195 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 NR4A3Q92570 626 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 SNX21Q969T3 373 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 ECHDC3Q96DC8 303 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 THOC3Q96J01 351 aaKnown RBP4.65□□□□□ -1.67
LIMS1-214ENST00000542845 SLC41A2Q96JW4 573 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 NSMCE3Q96MG7 304 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 IP6K3Q96PC2 410 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 SMIM14Q96QK8 99 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 FOXC2Q99958 501 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 ZNF559Q9BR84 538 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 TMEM121Q9BTD3 319 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 TUBB2BQ9BVA1 445 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 LIME1Q9H400 295 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 SP110Q9HB58 689 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 FANCEQ9HB96 536 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 PCMTD2Q9NV79 361 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 DNAJB12Q9NXW2 375 aaKnown RBP4.65□□□□□ -1.67
LIMS1-214ENST00000542845 PLA2G3Q9NZ20 509 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 SLC23A2Q9UGH3 650 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 TINAGQ9UJW2 476 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 CNTN6Q9UQ52 1028 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 RPH3AQ9Y2J0 694 aaPredicted RBP4.65□□□□□ -1.67
LIMS1-214ENST00000542845 PADI2Q9Y2J8 665 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 LUC7L2Q9Y383 392 aaKnown RBP4.65□□□□□ -1.67
LIMS1-214ENST00000542845 POLEQ07864 2286 aa4.65□□□□□ -1.67
LIMS1-214ENST00000542845 DOCK10Q96BY6 2186 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.64□□□□□ -1.67
LIMS1-214ENST00000542845 CCDC66A2RUB6 948 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 ARHGAP42A6NI28 874 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 BECN2A8MW95 431 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 PPP1R12AO14974 1030 aaPredicted RBP4.64□□□□□ -1.67
LIMS1-214ENST00000542845 ZNHIT1O43257 154 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 DAPK3O43293 454 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 SLC19A2O60779 497 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 PRAMEF11O60813 436 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 WISP2O76076 250 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 MTA2O94776 668 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 ZWINTO95229 277 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 JCHAINP01591 159 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 MYL1P05976 194 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 PNMA6AP0CW24 399 aaPredicted RBP4.64□□□□□ -1.67
LIMS1-214ENST00000542845 CBSLP0DN79 551 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 FOSL1P15407 271 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 TEAD1P28347 426 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 CDC25BP30305 580 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 CBSP35520 551 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 TDGF1P3P51864 188 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 DGKQP52824 942 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 ADAM8P78325 824 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 ARG2P78540 354 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 NRG1Q02297 640 aaPredicted RBP4.64□□□□□ -1.67
LIMS1-214ENST00000542845 DPTQ07507 201 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 ABRQ12979 859 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 AIMP2Q13155 320 aaKnown RBP4.64□□□□□ -1.67
LIMS1-214ENST00000542845 MYBPHQ13203 477 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 MPP2Q14168 576 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 TAF3Q5VWG9 929 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 PRAMEF13Q5VWM6 474 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 B3GNTL1Q67FW5 361 aaPredicted RBP4.64□□□□□ -1.67
LIMS1-214ENST00000542845 LRRC66Q68CR7 880 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 ISM2Q6H9L7 571 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 FAM198BQ6UWH4 519 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 C3P1Q6ZMU1 363 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 TRIM72Q6ZMU5 477 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 ARHGAP36Q6ZRI8 547 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 USP45Q70EL2 814 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 SLFN11Q7Z7L1 901 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 D2HGDHQ8N465 521 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 TAB3Q8N5C8 712 aaPredicted RBP4.64□□□□□ -1.67
LIMS1-214ENST00000542845 RTL3Q8N8U3 475 aaKnown RBP4.64□□□□□ -1.67
LIMS1-214ENST00000542845 TMEM35BQ8NCS4 154 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 OR1L3Q8NH93 324 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 GPT2Q8TD30 523 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 ADAMTS18Q8TE60 1221 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 RXFP2Q8WXD0 754 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms