RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 TFB2MQ9H5Q4 396 aaKnown RBP13.91□□□□□ -0.18
USP3-204ENST00000540797 ADGRE2Q9UHX3 823 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 TOP3BO95985 862 aaKnown RBP13.91□□□□□ -0.18
USP3-204ENST00000540797 CLCNKAP51800 687 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 NRLP54845 237 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 SLC13A2Q13183 592 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 SERINC3Q13530 473 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 POMZP3Q6PJE2 187 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 SMYD1Q8NB12 490 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 GATA5Q9BWX5 397 aaPredicted RBP13.91□□□□□ -0.18
USP3-204ENST00000540797 GSDMCQ9BYG8 508 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 FOXO6A8MYZ6 492 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 ADH1BP00325 375 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 ATP1B2P14415 290 aaPredicted RBP13.91□□□□□ -0.18
USP3-204ENST00000540797 CPN2P22792 545 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 FECHP22830 423 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 ARRB1P49407 418 aaPredicted RBP13.91□□□□□ -0.18
USP3-204ENST00000540797 GCNT6Q5T4J0 391 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 LRRC66Q68CR7 880 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 ERICH5Q6P6B1 374 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 PAQR3Q6TCH7 311 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 LIX1Q8N485 282 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 ADCY4Q8NFM4 1077 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 PAAF1Q9BRP4 392 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 SPHK2Q9NRA0 654 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 LGALS13Q9UHV8 139 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 SAMD4AQ9UPU9 718 aaKnown RBP13.91□□□□□ -0.18
USP3-204ENST00000540797 RGPD5Q99666 1765 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 DLGAP3O95886 979 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 PRG2P13727 222 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 ARMCX4Q5H9R4 360 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 ALKBH2Q6NS38 261 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 DEPDC4Q8N2C3 294 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 NAT8LQ8N9F0 302 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 FBXO15Q8NCQ5 510 aaPredicted RBP13.9□□□□□ -0.18
USP3-204ENST00000540797 OR10T2Q8NGX3 314 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 MOSPD2Q8NHP6 518 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 MS4A4AQ96JQ5 239 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 CNPPD1Q9BV87 410 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 COPS7AQ9UBW8 275 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 NEMP2A6NFY4 417 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 K7EPI3 171 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 UGT2B17O75795 530 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 KCNA5P22460 613 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 SLC9A4Q6AI14 798 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 GALNT18Q6P9A2 607 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 IFNLR1Q8IU57 520 aaPredicted RBP13.9□□□□□ -0.18
USP3-204ENST00000540797 LRRC15Q8TF66 581 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 C5orf34Q96MH7 638 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 DPYSL5Q9BPU6 564 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 ITM2CQ9NQX7 267 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 PAPOLBQ9NRJ5 636 aaKnown RBP13.9□□□□□ -0.18
USP3-204ENST00000540797 PRPS2P11908 318 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 HSPB3Q12988 150 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 VPS26BQ4G0F5 336 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 WDR45BQ5MNZ6 344 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 CYP2U1Q7Z449 544 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 DEFB119Q8N690 84 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 TMEM40Q8WWA1 233 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 TMEM109Q9BVC6 243 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 TMEM27Q9HBJ8 222 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 CNOT6Q9ULM6 557 aaKnown RBP13.9□□□□□ -0.18
USP3-204ENST00000540797 BACE2Q9Y5Z0 518 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 GMFGO60234 142 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 POP7O75817 140 aaKnown RBP13.9□□□□□ -0.18
USP3-204ENST00000540797 KLF8O95600 359 aaPredicted RBP13.9□□□□□ -0.18
USP3-204ENST00000540797 LAMP2P13473 410 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 RTP2Q5QGT7 225 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 OR8H2Q8N162 312 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 ANKRD27Q96NW4 1050 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 NEK6Q9HC98 313 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 SSU72Q9NP77 194 aaKnown RBP13.9□□□□□ -0.18
USP3-204ENST00000540797 ABI3Q9P2A4 366 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 LRCH1Q9Y2L9 728 aa13.9□□□□□ -0.18
USP3-204ENST00000540797 NBNO60934 754 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 CACNA2D1P54289 1103 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 USP46P62068 366 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 C14orf80Q86SX3 495 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 UBR7Q8N806 425 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 HERC2P3Q9BVR0 1158 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 C1orf109Q9NX04 203 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 FLRT1Q9NZU1 646 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 C2orf71A6NGG8 1288 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 ENO4A6NNW6 628 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 PIP5K1BO14986 540 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 NPHS1O60500 1241 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 HOXA11P31270 313 aaPredicted RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 CCR8P51685 355 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 ELF3P78545 371 aaPredicted RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 PRR5P85299 388 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 BNC1Q01954 994 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 TOP3AQ13472 1001 aaPredicted RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 PLEKHG6Q3KR16 790 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 VWA5B1Q5TIE3 1220 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 MCEMP1Q8IX19 187 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 BPIFB6Q8NFQ5 453 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 C1orf74Q96LT6 269 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 TDRD1Q9BXT4 1180 aaKnown RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 SLC2A4RGQ9NR83 387 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 HNRNPCP07910 306 aaKnown RBP eCLIP13.89□□□□□ -0.199e-7■■■□□ 16.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms