RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 SH3BP1Q9Y3L3 701 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 NEDD8-MDP1E9PL57 170 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 VILLO15195 856 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 SEC22BO75396 215 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 PGLSO95336 258 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 FESP07332 822 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 C8BP07358 591 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 C10orf111Q8N326 155 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 OR10A6Q8NH74 314 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 PLD4Q96BZ4 506 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 ITCHQ96J02 903 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 AIG1Q9NVV5 245 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 DUS2Q9NX74 493 aaKnown RBP16.63■□□□□ 0.25
USP28-208ENST00000540438 AASSQ9UDR5 926 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 A0A1W2PP18 115 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 PRKACGP22612 351 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 DNAJB1P25685 340 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 PSMA4P25789 261 aaKnown RBP16.63■□□□□ 0.25
USP28-208ENST00000540438 HMGCLP35914 325 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 EPHB3P54753 998 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 SPANXN4Q5MJ08 99 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 CYP20A1Q6UW02 462 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 GALNT15Q8N3T1 639 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 SGCDQ92629 289 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 DCUN1D5Q9BTE7 237 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 ELAC1Q9H777 363 aaKnown RBP16.63■□□□□ 0.25
USP28-208ENST00000540438 VAPAQ9P0L0 249 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 PLXNA3P51805 1871 aa16.63■□□□□ 0.25
USP28-208ENST00000540438 GLYATL1P3A0A0U1RQE8 302 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 TYW5A2RUC4 315 aaKnown RBP16.62■□□□□ 0.25
USP28-208ENST00000540438 DENRO43583 198 aaKnown RBP16.62■□□□□ 0.25
USP28-208ENST00000540438 CCR2P41597 374 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 ASTLQ6HA08 431 aaPredicted RBP16.62■□□□□ 0.25
USP28-208ENST00000540438 ULK4Q96C45 1275 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 EBPLQ9BY08 206 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 SLC52A3Q9NQ40 469 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 MRPL17Q9NRX2 175 aaKnown RBP16.62■□□□□ 0.25
USP28-208ENST00000540438 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.62■□□□□ 0.25
USP28-208ENST00000540438 COL4A4P53420 1690 aaPredicted RBP16.62■□□□□ 0.25
USP28-208ENST00000540438 TGM5O43548 720 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 NOBOXO60393 691 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 ABLIM3O94929 683 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 SOD2P04179 222 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 PBLDP30039 288 aaPredicted RBP16.62■□□□□ 0.25
USP28-208ENST00000540438 SLC26A3P40879 764 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 PTGER3P43115 390 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 CACNG1Q06432 222 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 GALNT1Q10472 559 aaPredicted RBP16.62■□□□□ 0.25
USP28-208ENST00000540438 ALG1LQ6GMV1 187 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 ADNP2Q6IQ32 1131 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 ADGRG5Q8IZF4 528 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 CLEC4FQ8N1N0 589 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 TSPAN14Q8NG11 270 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 PNPT1Q8TCS8 783 aaKnown RBP16.62■□□□□ 0.25
USP28-208ENST00000540438 ING5Q8WYH8 240 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 KCNJ9Q92806 393 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 ALG14Q96F25 216 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 TMEM39AQ9NV64 488 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 PCDHA9Q9Y5H5 950 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 OR51B4Q9Y5P0 310 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 WDR87Q6ZQQ6 2873 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 GLUD1P00367 558 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 S100BP04271 92 aaPredicted RBP16.62■□□□□ 0.25
USP28-208ENST00000540438 LHCGRP22888 699 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 PAX3P23760 479 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 HLA-FP30511 346 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 AKT1P31749 480 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 ACADVLP49748 655 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 VEGFBP49765 207 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 IL1RL1Q01638 556 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 GRM2Q14416 872 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 IMPG1Q17R60 797 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 ANKRD26P1Q6NSI1 321 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 DPY19L3Q6ZPD9 716 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 BIRC7Q96CA5 298 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 VWCEQ96DN2 955 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 YME1L1Q96TA2 773 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 CARS2Q9HA77 564 aaKnown RBP16.62■□□□□ 0.25
USP28-208ENST00000540438 IL21Q9HBE4 155 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 GID8Q9NWU2 228 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 ZNF490Q9ULM2 529 aaPredicted RBP16.62■□□□□ 0.25
USP28-208ENST00000540438 RAB26Q9ULW5 256 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 DHRS7Q9Y394 339 aa16.62■□□□□ 0.25
USP28-208ENST00000540438 FNDC1Q4ZHG4 1894 aaPredicted RBP16.61■□□□□ 0.25
USP28-208ENST00000540438 NR4A1P22736 598 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 PIGFQ07326 219 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 ZXDCQ2QGD7 858 aaPredicted RBP16.61■□□□□ 0.25
USP28-208ENST00000540438 CWF19L1Q69YN2 538 aaKnown RBP16.61■□□□□ 0.25
USP28-208ENST00000540438 GLYATQ6IB77 296 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 ENPP6Q6UWR7 440 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 GCNT7Q6ZNI0 430 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 PARP8Q8N3A8 854 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 LIX1Q8N485 282 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 ZNF558Q96NG5 402 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 TRAPPC9Q96Q05 1148 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 HPS4Q9NQG7 708 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 OLAHQ9NV23 265 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 ARL15Q9NXU5 204 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 ARIH1Q9Y4X5 557 aaPredicted RBP16.61■□□□□ 0.25
USP28-208ENST00000540438 AHCYL1O43865 530 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms