RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 PEX12O00623 359 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 KLF7O75840 302 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 MSL3P1P0C860 447 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 CYP2A7P20853 494 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 CDK11BP21127 795 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 AGXTP21549 392 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 ITGA3P26006 1051 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 PREPP48147 710 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 SOX8P57073 446 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 SLC10A2Q12908 348 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 XRCC4Q13426 336 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 NFE2L1Q14494 772 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 LLGL1Q15334 1064 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 ASIC2Q16515 512 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 PTCHD3Q3KNS1 767 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 ZNF789Q5FWF6 425 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 SPOCD1Q6ZMY3 1216 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 MRGPREQ86SM8 312 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 BEND7Q8N7W2 519 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 RASGEF1AQ8N9B8 481 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 DTX3LQ8TDB6 740 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 HDAC11Q96DB2 347 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 IMP4Q96G21 291 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 PPM1MQ96MI6 270 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 INSM2Q96T92 566 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 SLC7A5P2Q9GIP4 190 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 BPIFA1Q9NP55 256 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 AIPL1Q9NZN9 384 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 OSGIN2Q9Y236 505 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 CFAP20Q9Y6A4 193 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 SEC16AO15027 2179 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 TMEM150CB9EJG8 249 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 PRSS44E7EML9 344 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 KCNK1O00180 336 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 AURKAO14965 403 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 DDX3YO15523 660 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 LDB2O43679 373 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 ZG16O60844 167 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 HBQ1P09105 142 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 POLR2CP19387 275 aaPredicted RBP11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 CDH3P22223 829 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 HMGCLP35914 325 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 PRKCIP41743 596 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 SSR1P43307 286 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 ARCN1P48444 511 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 CTSCP53634 463 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 IFI35P80217 286 aaPredicted RBP11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 GBE1Q04446 702 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 PRKAA1Q13131 559 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 PDK2Q15119 407 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 HADHQ16836 314 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 ATP13A4Q4VNC1 1196 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 CCDC70Q6NSX1 233 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 TMEM220Q6QAJ8 160 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 APTXQ7Z2E3 356 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 NT5DC3Q86UY8 548 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 ZC3H18Q86VM9 953 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 KCTD6Q8NC69 237 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 BTBD6Q96KE9 485 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 C17orf62Q9BQA9 187 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 ZNF670Q9BS34 389 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 ZCCHC2Q9C0B9 1178 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 WWP1Q9H0M0 922 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 KIR3DX1Q9H7L2 352 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 ZBTB20Q9HC78 741 aaPredicted RBP11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 IL26Q9NPH9 171 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 POMT2Q9UKY4 750 aa11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 MDC1Q14676 2089 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-209ENST00000539982 ADGRG4Q8IZF6 3080 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 A0A1B0GUH1 482 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 OR2AG2A6NM03 316 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 E7EQ34 232 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 MATN2O00339 956 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 MAP3K7O43318 606 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 ZNF749O43361 778 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 MBD3O95983 291 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 CD63P08962 238 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 EDN3P14138 238 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 PPIDQ08752 370 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 KLHL30Q0D2K2 578 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 ZBTB17Q13105 803 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 PCSK7Q16549 785 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 ZXDCQ2QGD7 858 aaPredicted RBP11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 ANO6Q4KMQ2 910 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 LDLRAP1Q5SW96 308 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 MLIPQ5VWP3 458 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 ZDHHC20Q5W0Z9 365 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 ZNF385CQ66K41 422 aaPredicted RBP11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 MAP7D3Q8IWC1 876 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 PQLC3Q8N755 202 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 OR4E2Q8NGC2 313 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 TADA1Q96BN2 335 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 FAF2Q96CS3 445 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 C12orf66Q96MD2 445 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 SLC25A51Q9H1U9 297 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 CBX8Q9HC52 389 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 ATP13A2Q9NQ11 1180 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 P4HTMQ9NXG6 502 aa11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLSTN3-209ENST00000539982 COPG2Q9UBF2 871 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms