RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 ETV3P41162 512 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 EIF2DP41214 584 aaKnown RBP13.79□□□□□ -0.2
LIG1-203ENST00000536218 POLD2P49005 469 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 FCHO2Q0JRZ9 810 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 GRTP1Q5TC63 336 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 PLD3Q8IV08 490 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 RTL3Q8N8U3 475 aaKnown RBP13.79□□□□□ -0.2
LIG1-203ENST00000536218 RHOXF1Q8NHV9 184 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 RASSF5Q8WWW0 418 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 DUS3LQ96G46 650 aaKnown RBP13.79□□□□□ -0.2
LIG1-203ENST00000536218 SNX18Q96RF0 628 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 RBBP8Q99708 897 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 C6orf62Q9GZU0 229 aaPredicted RBP13.79□□□□□ -0.2
LIG1-203ENST00000536218 CCSER2Q9H7U1 834 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 EXD2Q9NVH0 621 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 MARCH2Q9P0N8 246 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 AAR2Q9Y312 384 aaKnown RBP13.79□□□□□ -0.2
LIG1-203ENST00000536218 AREL1O15033 823 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 UBDO15205 165 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 FGF10O15520 208 aaPredicted RBP13.79□□□□□ -0.2
LIG1-203ENST00000536218 NRP2O60462 931 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 C2P06681 752 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 NCK1P16333 377 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 TGFBR1P36897 503 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 BNIP2Q12982 314 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 NAB1Q13506 487 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 SUZ12Q15022 739 aaKnown RBP13.79□□□□□ -0.2
LIG1-203ENST00000536218 SKIV2LQ15477 1246 aaKnown RBP13.79□□□□□ -0.2
LIG1-203ENST00000536218 MAPRE2Q15555 327 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 MS4A13Q5J8X5 152 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 FAM219BQ5XKK7 198 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 FUT10Q6P4F1 479 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 SPRED1Q7Z699 444 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 DENND6AQ8IWF6 608 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 GALNT6Q8NCL4 622 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 MCFD2Q8NI22 146 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 ANGPTL6Q8NI99 470 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 NXNL1Q96CM4 212 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 HMCESQ96FZ2 354 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 RPRD1AQ96P16 312 aaPredicted RBP13.79□□□□□ -0.2
LIG1-203ENST00000536218 CASD1Q96PB1 797 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 OMDQ99983 421 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 C2orf49Q9BVC5 232 aaPredicted RBP13.79□□□□□ -0.2
LIG1-203ENST00000536218 FTHL17Q9BXU8 183 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 TMEM181Q9P2C4 612 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 VTI1BQ9UEU0 232 aa13.79□□□□□ -0.2
LIG1-203ENST00000536218 HNRNPLP14866 589 aaKnown RBP eCLIP13.78□□□□□ -0.2
LIG1-203ENST00000536218 OR2B6P58173 313 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 ACAP2Q15057 778 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 MANEALQ5VSG8 457 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 THAP5Q7Z6K1 395 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 CFAP52Q8N1V2 620 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 SPATA6LQ8N4H0 392 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 OR13J1Q8NGT2 312 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 IGSF8Q969P0 613 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 FUBP3Q96I24 572 aaKnown RBP eCLIP13.78□□□□□ -0.2
LIG1-203ENST00000536218 TSNARE1Q96NA8 513 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 FBXO8Q9NRD0 319 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 MAT2BQ9NZL9 334 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 TLR6Q9Y2C9 796 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 MAGED1Q9Y5V3 778 aaPredicted RBP13.78□□□□□ -0.2
LIG1-203ENST00000536218 B8ZZF3 427 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 INPPL1O15357 1258 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 SCO1O75880 301 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 LDLRP01130 860 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 SLC4A1P02730 911 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 GP2P55259 537 aaKnown RBP13.78□□□□□ -0.2
LIG1-203ENST00000536218 SLC10A7Q0GE19 358 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 AGAP6Q5VW22 663 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 LIPMQ5VYY2 423 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 BEND5Q7L4P6 421 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 TOR1AIP2Q8NFQ8 470 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 OR6F1Q8NGZ6 308 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 PXYLP1Q8TE99 480 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 SLC22A17Q8WUG5 538 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 ZNF296Q8WUU4 475 aaPredicted RBP13.78□□□□□ -0.2
LIG1-203ENST00000536218 DPF3Q92784 378 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 C8orf48Q96LL4 319 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 AGAP4Q96P64 663 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 MRPL9Q9BYD2 267 aaKnown RBP13.78□□□□□ -0.2
LIG1-203ENST00000536218 PIF1Q9H611 641 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 MARCH5Q9NX47 278 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 UBA2Q9UBT2 640 aaPredicted RBP13.78□□□□□ -0.2
LIG1-203ENST00000536218 PDE10AQ9Y233 779 aa13.78□□□□□ -0.2
LIG1-203ENST00000536218 ATP6AP2A0A1C7CYW4 349 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 MTMR11A4FU01 709 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 SDHDO14521 159 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 ADAM12O43184 909 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 MTRF1O75570 445 aaKnown RBP13.77□□□□□ -0.2
LIG1-203ENST00000536218 ATP6AP2O75787 350 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 ANXA9O76027 345 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 FKBP9O95302 570 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 DBTP11182 482 aaKnown RBP13.77□□□□□ -0.2
LIG1-203ENST00000536218 AGXTP21549 392 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 OR3A3P47888 321 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 ARCN1P48444 511 aaKnown RBP13.77□□□□□ -0.2
LIG1-203ENST00000536218 ADARB1P78563 741 aaKnown RBP13.77□□□□□ -0.2
LIG1-203ENST00000536218 GRM3Q14832 879 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 DPY19L1Q2PZI1 675 aa13.77□□□□□ -0.2
LIG1-203ENST00000536218 IL31Q6EBC2 164 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms