RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ZFP1Q6P2D0 407 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 IZUMO2Q6UXV1 221 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 PDZD4Q76G19 769 aaPredicted RBP5.44□□□□□ -1.54
CD44-236ENST00000533222 FRMD5Q7Z6J6 570 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 ARPINQ7Z6K5 226 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 HERC6Q8IVU3 1022 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 GPALPP1Q8IXQ4 340 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 UNC5BQ8IZJ1 945 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 RBFAQ8N0V3 343 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 NAGSQ8N159 534 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 SLC43A2Q8N370 569 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 PLA2G15Q8NCC3 412 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 ZBTB44Q8NCP5 570 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 SLC17A8Q8NDX2 589 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 OR7G3Q8NG95 312 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 HUS1BQ8NHY5 278 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 PNPT1Q8TCS8 783 aaKnown RBP5.44□□□□□ -1.54
CD44-236ENST00000533222 SLC5A11Q8WWX8 675 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 CASKIN1Q8WXD9 1431 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 STAMQ92783 540 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 GCDHQ92947 438 aaPredicted RBP5.44□□□□□ -1.54
CD44-236ENST00000533222 USP13Q92995 863 aaPredicted RBP5.44□□□□□ -1.54
CD44-236ENST00000533222 C18orf25Q96B23 403 aaPredicted RBP5.44□□□□□ -1.54
CD44-236ENST00000533222 SUCLG2Q96I99 432 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 C20orf173Q96LM9 149 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 QKIQ96PU8 341 aaKnown RBP eCLIP5.44□□□□□ -1.54
CD44-236ENST00000533222 PIGSQ96S52 555 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 CCNL2Q96S94 520 aaPredicted RBP5.44□□□□□ -1.54
CD44-236ENST00000533222 GPHA2Q96T91 129 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 C12orf57Q99622 126 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 TREX2Q9BQ50 279 aaPredicted RBP5.44□□□□□ -1.54
CD44-236ENST00000533222 ELAC2Q9BQ52 826 aaKnown RBP5.44□□□□□ -1.54
CD44-236ENST00000533222 CNPY3Q9BT09 278 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 ZNF416Q9BWM5 594 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 ZYG11BQ9C0D3 744 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 RACGAP1Q9H0H5 632 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 C1orf21Q9H246 121 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 LDAHQ9H6V9 325 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 AGO3Q9H9G7 860 aaKnown RBP5.44□□□□□ -1.54
CD44-236ENST00000533222 RXFP3Q9NSD7 469 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 ELOVL2Q9NXB9 296 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 CCDC59Q9P031 241 aaKnown RBP5.44□□□□□ -1.54
CD44-236ENST00000533222 PPP4R1LQ9P1A2 415 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 CFAP97Q9P2B7 532 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 IFT172Q9UG01 1749 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 FAM153AQ9UHL3 310 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 SERPINB13Q9UIV8 391 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 MAN1B1Q9UKM7 699 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 RAB23Q9ULC3 237 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 RUVBL2Q9Y230 463 aaKnown RBP5.44□□□□□ -1.54
CD44-236ENST00000533222 TNFSF13BQ9Y275 285 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 CDC42BPBQ9Y5S2 1711 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 FKBP7Q9Y680 259 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 UBE4BO95155 1302 aa5.44□□□□□ -1.54
CD44-236ENST00000533222 IQGAP1P46940 1657 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ARAP3Q8WWN8 1544 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ARHGEF5Q12774 1597 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PLCH2O75038 1416 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 A0A1W2PPW3 197 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PRR23AA6NEV1 266 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 FAM47DPA6NHR8 397 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 SAGE2PA6NJ88 616 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 CENPXA8MT69 81 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 CLDN25C9JDP6 229 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 SNAP23O00161 211 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 NPC1O15118 1278 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 CLDN3O15551 220 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 FRS3O43559 492 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 BUD23O43709 281 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 NUDT21O43809 227 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 AKAP8O43823 692 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 NRP2O60462 931 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 NDUFS2O75306 463 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 TRIM3O75382 744 aaPredicted RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 ENDOD1O94919 500 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 HAUS5O94927 633 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 GOSR1O95249 250 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 IL18RAPO95256 599 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PTTG1O95997 202 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 IFNA2P01563 188 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 JUNP05412 331 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 CDK1P06493 297 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 YES1P07947 543 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 KRT19P08727 400 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ANXA5P08758 320 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 RBP1P09455 135 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 CNPP09543 421 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 IFIT1P09914 478 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 RALAP11233 206 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 GALP22466 123 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 DCKP27707 260 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 GJB2P29033 226 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 EEF1DP29692 281 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 PDHA2P29803 388 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 CTNNB1P35222 781 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 EIF2DP41214 584 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 VEGFCP49767 419 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 TMBIM6P55061 237 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 NRG3P56975 720 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 TAS2R60P59551 318 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms