RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 HRASLS2Q9NWW9 162 aa13.36□□□□□ -0.27
TCOF1-215ENST00000515516 ZDHHC3Q9NYG2 299 aa13.36□□□□□ -0.27
TCOF1-215ENST00000515516 LOC101059948A0A1B0GTJ6 334 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 LDB2O43679 373 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 KRT86O43790 486 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 SLC28A2O43868 658 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 KIAA0754O94854 1291 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 METTL18O95568 372 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 MT-ND3P03897 115 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 PRKAR1AP10644 381 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 STIP1P31948 543 aaKnown RBP13.35□□□□□ -0.27
TCOF1-215ENST00000515516 ACY1Q03154 408 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 PRKAA1Q13131 559 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 KLF1Q13351 362 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-215ENST00000515516 MSLNQ13421 630 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-215ENST00000515516 POU6F1Q14863 301 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 KCTD11Q693B1 232 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 PRICKLE2Q7Z3G6 844 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 KMT5CQ86Y97 462 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 DNAAF3Q8N9W5 541 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 STYXQ8WUJ0 223 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 DNAJC1Q96KC8 554 aaKnown RBP13.35□□□□□ -0.27
TCOF1-215ENST00000515516 ADNPQ9H2P0 1102 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 NLE1Q9NVX2 485 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-215ENST00000515516 LNPEPQ9UIQ6 1025 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 RARRES3Q9UL19 164 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 R3HDM2Q9Y2K5 976 aaKnown RBP13.35□□□□□ -0.27
TCOF1-215ENST00000515516 PCDHB3Q9Y5E6 796 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 RPS6KL1Q9Y6S9 549 aa13.35□□□□□ -0.27
TCOF1-215ENST00000515516 FASNP49327 2511 aaKnown RBP13.35□□□□□ -0.27
TCOF1-215ENST00000515516 C17orf113A0A1B0GUU1 675 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 OR6C74A6NCV1 312 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 OR5K3A6NET4 321 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 AGAP14A8MT82 685 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 E7EVH7 732 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 IFRD1O00458 451 aaPredicted RBP13.34□□□□□ -0.27
TCOF1-215ENST00000515516 CCL22O00626 93 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 NKX2-8O15522 239 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 MAP3K7O43318 606 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 SPAG6O75602 509 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 AP2A1O95782 977 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 DLGAP3O95886 979 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 FGF5P12034 268 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 TCN2P20062 427 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 ACRV1P26436 265 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 STAT5AP42229 794 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 PRLHRP49683 370 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 GSDMDP57764 484 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 CACNG1Q06432 222 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 TUBB3Q13509 450 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 LAMB3Q13751 1172 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 SKIDA1Q1XH10 827 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.34□□□□□ -0.27
TCOF1-215ENST00000515516 TMTC4Q5T4D3 741 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 C16orf46Q6P387 395 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 BPHLQ86WA6 291 aaPredicted RBP13.34□□□□□ -0.27
TCOF1-215ENST00000515516 SERPINA9Q86WD7 417 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 KLHDC8BQ8IXV7 354 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 TAB3Q8N5C8 712 aaPredicted RBP13.34□□□□□ -0.27
TCOF1-215ENST00000515516 GALNT6Q8NCL4 622 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 SPDYE1Q8NFV5 336 aaPredicted RBP13.34□□□□□ -0.27
TCOF1-215ENST00000515516 SLC35B2Q8TB61 432 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 NAT14Q8WUY8 206 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 FERD3LQ96RJ6 166 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 KIR3DX1Q9H7L2 352 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 GEMIN8Q9NWZ8 242 aaKnown RBP13.34□□□□□ -0.27
TCOF1-215ENST00000515516 SLC24A2Q9UI40 661 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 GUCA1BQ9UMX6 200 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 ZNF148Q9UQR1 794 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 CAPN6Q9Y6Q1 641 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 BAHCC1Q9P281 2608 aa13.34□□□□□ -0.27
TCOF1-215ENST00000515516 AHCTF1Q8WYP5 2266 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 IGHV5-51A0A0C4DH38 117 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 A0A0U1RQJ8 604 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 TCRBV7S2A1N4TA0A589 114 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 TLCD2A6NGC4 264 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 ERI2A8K979 691 aaKnown RBP13.33□□□□□ -0.28
TCOF1-215ENST00000515516 H7C0S8 307 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 KATNA1O75449 491 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 IFNB1P01574 187 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 GSTM1P09488 218 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 ZNF28P17035 718 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 DLSTP36957 453 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 FDFT1P37268 417 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 GDF10P55107 478 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 HSD11B2P80365 405 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 GSTM4Q03013 218 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 CDC20Q12834 499 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 CAPRIN2Q6IMN6 1127 aaKnown RBP13.33□□□□□ -0.28
TCOF1-215ENST00000515516 DUS1LQ6P1R4 473 aaKnown RBP13.33□□□□□ -0.28
TCOF1-215ENST00000515516 PPP1R21Q6ZMI0 780 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 CARFQ8N187 725 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 ACVR1CQ8NER5 493 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 OR4E2Q8NGC2 313 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 LCN9Q8WX39 176 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 STARD8Q92502 1023 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.33□□□□□ -0.283e-9■■■■■ 78.5
TCOF1-215ENST00000515516 CDKN2AIPNLQ96HQ2 116 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 SLC41A2Q96JW4 573 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 FCRL4Q96PJ5 515 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms