RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FAM32AQ9Y421 112 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 SNX5Q9Y5X3 404 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 TLN1Q9Y490 2541 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 PRAMEF33A0A0G2JMD5 474 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 PDLIM1O00151 329 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 MPOP05164 745 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 CHRM5P08912 532 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 TDGF1P13385 188 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 LHCGRP22888 699 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 GLT6D1Q7Z4J2 308 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 ELMOD2Q8IZ81 293 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 HPS1Q92902 700 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 MAGOHBQ96A72 148 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 WDR26Q9H7D7 661 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 ZNF212Q9UDV6 495 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 ASIC3Q9UHC3 531 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 RIMKLBQ9ULI2 386 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 ANKRD12Q6UB98 2062 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 hCG_1818297A0A087WSY0 165 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 A0A0A6YYK5 440 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 UBA6A0AVT1 1052 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 ANKRD34BA5PLL1 514 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 CACNB4O00305 520 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 MATN2O00339 956 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 STX7O15400 261 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 NOL3O60936 208 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 TJP3O95049 919 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 HNRNPH3P31942 346 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 POLR2LP62875 67 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 IHHQ14623 411 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 FNBP1LQ5T0N5 605 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 PHF19Q5T6S3 580 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 N4BP2L1Q5TBK1 243 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 NKAIN2Q5VXU1 208 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 OR13C4Q8NGS5 318 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 ALKBH8Q96BT7 664 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 NUS1Q96E22 293 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 SGF29Q96ES7 293 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 CNDP2Q96KP4 475 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 LMLNQ96KR4 655 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 PAIP1Q9H074 479 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 DDX47Q9H0S4 455 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 SERHL2Q9H4I8 314 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 NTN4Q9HB63 628 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 USP36Q9P275 1121 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 KLQ9UEF7 1012 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 FTSJ1Q9UET6 329 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 VTI1BQ9UEU0 232 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 NEU3Q9UQ49 428 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 RUVBL2Q9Y230 463 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 MRPS7Q9Y2R9 242 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 CDK2AP1O14519 115 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 MATN3O15232 486 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 SIGLEC6O43699 453 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 AVILO75366 819 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 GCATO75600 419 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 ATP6V1C1P21283 382 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 PTPN3P26045 913 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 HAAOP46952 286 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 SEPHS1P49903 392 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 MAZP56270 477 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 SCAPQ12770 1279 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 SEMA3BQ13214 749 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 PRKG2Q13237 762 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 TRIM25Q14258 630 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 PUM1Q14671 1186 aaKnown RBP eCLIP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 ZNF284Q2VY69 593 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 FAM129CQ86XR2 697 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 RCOR2Q8IZ40 523 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 LZTR1Q8N653 840 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 CLDN19Q8N6F1 224 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 UBLCP1Q8WVY7 318 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 BMFQ96LC9 184 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 ZNF670Q9BS34 389 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 UNKQ9C0B0 810 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 DPH5Q9H2P9 285 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 SCPEP1Q9HB40 452 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 FGF22Q9HCT0 170 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 COMMD3-BMI1R4GMX3 469 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 A0A0A0MRY4 1105 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 PRAMEF26H0Y7S4 382 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 PSMD11O00231 422 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 TRIM38O00635 465 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 UBOX5O94941 541 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 KCNK5O95279 499 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 ANXA6P08133 673 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 TGM1P22735 817 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 ITGB7P26010 798 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 IGFALSP35858 605 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 RELAQ04206 551 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 CDK18Q07002 472 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 CYP4F3Q08477 520 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 ZNF528Q3MIS6 628 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 PDCD4Q53EL6 469 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 C3orf38Q5JPI3 329 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 PXDC1Q5TGL8 231 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 LIPIQ6XZB0 460 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 YTHDF3Q7Z739 585 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 TMEM139Q8IV31 216 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms