RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 FAM83HQ6ZRV2 1179 aaPredicted RBP16.03■□□□□ 0.16
VIM-208ENST00000497849 TMC3Q7Z5M5 1100 aa16.03■□□□□ 0.16
VIM-208ENST00000497849 OOSP2Q86WS3 158 aa16.03■□□□□ 0.16
VIM-208ENST00000497849 TRAPPC5Q8IUR0 188 aa16.03■□□□□ 0.16
VIM-208ENST00000497849 FAR1Q8WVX9 515 aa16.03■□□□□ 0.16
VIM-208ENST00000497849 POM121Q96HA1 1249 aa16.03■□□□□ 0.16
VIM-208ENST00000497849 IP6K3Q96PC2 410 aa16.03■□□□□ 0.16
VIM-208ENST00000497849 WDR77Q9BQA1 342 aaPredicted RBP16.03■□□□□ 0.16
VIM-208ENST00000497849 XPO4Q9C0E2 1151 aaKnown RBP16.03■□□□□ 0.16
VIM-208ENST00000497849 PCDH18Q9HCL0 1135 aa16.03■□□□□ 0.16
VIM-208ENST00000497849 AMACRQ9UHK6 382 aa16.03■□□□□ 0.16
VIM-208ENST00000497849 SHOC2Q9UQ13 582 aa16.03■□□□□ 0.16
VIM-208ENST00000497849 NUP210LQ5VU65 1888 aa16.03■□□□□ 0.16
VIM-208ENST00000497849 A0A1B0GUH1 482 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 SLC9B1P1A6NJY1 282 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 KLHL41O60662 606 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 PIRTP0C851 137 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 HADHAP40939 763 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 ARCN1P48444 511 aaKnown RBP16.02■□□□□ 0.16
VIM-208ENST00000497849 DMPKQ09013 629 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 TMEM115Q12893 351 aaPredicted RBP16.02■□□□□ 0.16
VIM-208ENST00000497849 SSPNQ14714 243 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 CARFQ8N187 725 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 LRRN4Q8WUT4 740 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 DHRS4Q9BTZ2 278 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 FANCEQ9HB96 536 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 P4HTMQ9NXG6 502 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 PADI2Q9Y2J8 665 aa16.02■□□□□ 0.16
VIM-208ENST00000497849 KLF2Q9Y5W3 355 aaPredicted RBP16.02■□□□□ 0.16
VIM-208ENST00000497849 CFAP20Q9Y6A4 193 aaKnown RBP16.02■□□□□ 0.16
VIM-208ENST00000497849 DNHD1Q96M86 4753 aa16.02■□□□□ 0.15
VIM-208ENST00000497849 OR6C74A6NCV1 312 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 TMEM150CB9EJG8 249 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 LDB2O43679 373 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 SNRPB2P08579 225 aaKnown RBP16.01■□□□□ 0.15
VIM-208ENST00000497849 MTHFD1P11586 935 aaKnown RBP16.01■□□□□ 0.15
VIM-208ENST00000497849 BPIP17213 487 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 CD86P42081 329 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 TSFMP43897 325 aaKnown RBP16.01■□□□□ 0.15
VIM-208ENST00000497849 HIF1AQ16665 826 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 DUS1LQ6P1R4 473 aaKnown RBP16.01■□□□□ 0.15
VIM-208ENST00000497849 AMZ2Q86W34 360 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 TMEM151BQ8IW70 566 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 NEK11Q8NG66 645 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 ITLN2Q8WWU7 325 aaPredicted RBP16.01■□□□□ 0.15
VIM-208ENST00000497849 FATE1Q969F0 183 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 TRAPPC9Q96Q05 1148 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 VPS35Q96QK1 796 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 SLX1AQ9BQ83 275 aa16.01■□□□□ 0.15
VIM-208ENST00000497849 DPH2Q9BQC3 489 aaPredicted RBP16.01■□□□□ 0.15
VIM-208ENST00000497849 IMP3Q9NV31 184 aaKnown RBP16.01■□□□□ 0.15
VIM-208ENST00000497849 A0A1W2PQJ5 194 aa16■□□□□ 0.15
VIM-208ENST00000497849 C9J4A7 227 aa16■□□□□ 0.15
VIM-208ENST00000497849 KCNJ13O60928 360 aa16■□□□□ 0.15
VIM-208ENST00000497849 POP7O75817 140 aaKnown RBP16■□□□□ 0.15
VIM-208ENST00000497849 SLC4A1P02730 911 aa16■□□□□ 0.15
VIM-208ENST00000497849 CYP2A7P20853 494 aa16■□□□□ 0.15
VIM-208ENST00000497849 CCNCP24863 283 aa16■□□□□ 0.15
VIM-208ENST00000497849 FOXL2P58012 376 aa16■□□□□ 0.15
VIM-208ENST00000497849 ADCY2Q08462 1091 aa16■□□□□ 0.15
VIM-208ENST00000497849 MMRN1Q13201 1228 aa16■□□□□ 0.15
VIM-208ENST00000497849 NFE2L1Q14494 772 aa16■□□□□ 0.15
VIM-208ENST00000497849 ATP13A5Q4VNC0 1218 aa16■□□□□ 0.15
VIM-208ENST00000497849 TIGD7Q6NT04 549 aaPredicted RBP16■□□□□ 0.15
VIM-208ENST00000497849 IRF2BP2Q7Z5L9 587 aa16■□□□□ 0.15
VIM-208ENST00000497849 PPP4R1Q8TF05 950 aa16■□□□□ 0.15
VIM-208ENST00000497849 RELTQ969Z4 430 aa16■□□□□ 0.15
VIM-208ENST00000497849 TSGA13Q96PP4 275 aa16■□□□□ 0.15
VIM-208ENST00000497849 ERGIC2Q96RQ1 377 aa16■□□□□ 0.15
VIM-208ENST00000497849 TRIB3Q96RU7 358 aa16■□□□□ 0.15
VIM-208ENST00000497849 INSM2Q96T92 566 aaPredicted RBP16■□□□□ 0.15
VIM-208ENST00000497849 ADGRE3Q9BY15 652 aa16■□□□□ 0.15
VIM-208ENST00000497849 TRIM8Q9BZR9 551 aa16■□□□□ 0.15
VIM-208ENST00000497849 RAD18Q9NS91 495 aa16■□□□□ 0.15
VIM-208ENST00000497849 SLC24A2Q9UI40 661 aa16■□□□□ 0.15
VIM-208ENST00000497849 ZNF711Q9Y462 761 aa16■□□□□ 0.15
VIM-208ENST00000497849 PEX12O00623 359 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 ZNF749O43361 778 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 IGHEP01854 428 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 CD48P09326 243 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 MSL3P1P0C860 447 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 CDH3P22223 829 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 PREPP48147 710 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 CTSCP53634 463 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 GTF2H3Q13889 308 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 PAFAH1B3Q15102 231 aaKnown RBP15.99■□□□□ 0.15
VIM-208ENST00000497849 IFI16Q16666 785 aaKnown RBP15.99■□□□□ 0.15
VIM-208ENST00000497849 FAM182AQ5T1J6 154 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 MLIPQ5VWP3 458 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 NCBP2-AS2Q69YL0 99 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 ARMC6Q6NXE6 501 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 PPP1R2P3Q6NXS1 205 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 IGFL2Q6UWQ7 119 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 SPNS3Q6ZMD2 512 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 PPP1R32Q7Z5V6 425 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 TEKT4Q8WW24 435 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 SYTL2Q9HCH5 934 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 MAGEE1Q9HCI5 957 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 C1GALT1Q9NS00 363 aa15.99■□□□□ 0.15
VIM-208ENST00000497849 POMT2Q9UKY4 750 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms