RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 RNF112Q9ULX5 631 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 OR2A25A4D2G3 310 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 A8MU76 341 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 WASH4PA8MWX3 477 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 EFCAB9A8MZ26 197 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 HHLA1C9JL84 531 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 HAT1O14929 419 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 ANKRD28O15084 1053 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 RAD51BO15315 384 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 NDUFB5O43674 189 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 IDH3BO43837 385 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 GLP2RO95838 553 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 DLGAP3O95886 979 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 S100BP04271 92 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 KRT8P05787 483 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 EFNA1P20827 205 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 ALDH4A1P30038 563 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 ETV6P41212 452 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 NR4A2P43354 598 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 ARSDP51689 593 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 CSNK2BP67870 215 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 NRG1Q02297 640 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 YWHAHQ04917 246 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 TRAF3Q13114 568 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 TYSND1Q2T9J0 566 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 AGAP6Q5VW22 663 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 GPRIN1Q7Z2K8 1008 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 HS3ST5Q8IZT8 346 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 RYBPQ8N488 228 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 ZMIZ2Q8NF64 920 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 FBXO30Q8TB52 745 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 SH3RF2Q8TEC5 729 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 RASSF5Q8WWW0 418 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 FIG4Q92562 907 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 SLC38A4Q969I6 547 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 TADA1Q96BN2 335 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 AGAP4Q96P64 663 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 ZNF382Q96SR6 550 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 APOL4Q9BPW4 351 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 C17orf80Q9BSJ5 609 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 EMILIN2Q9BXX0 1053 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 DCSTAMPQ9H295 470 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 NXF3Q9H4D5 531 aaKnown RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 DCAF13Q9NV06 445 aaKnown RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 CCDC59Q9P031 241 aaKnown RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 DKK3Q9UBP4 350 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 ZNF225Q9UK10 706 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 TIMM22Q9Y584 194 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 ANKRD36A6QL64 1941 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 ELOVL7A1L3X0 281 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 CXCR6O00574 342 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 KMOO15229 486 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 TPD52L2O43399 206 aaKnown RBP9.53□□□□□ -0.88
SYNE1-230ENST00000495090 LDB2O43679 373 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 RECQL5O94762 991 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-230ENST00000495090 ZBTB7AO95365 584 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 PEX11BO96011 259 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 SLC4A1P02730 911 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 MT-ND2P03891 347 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 CD36P16671 472 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 IGFBP5P24593 272 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 MAGEA2P43356 314 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 MAP2K4P45985 399 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 TRPC1P48995 793 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 SCNN1GP51170 649 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 RENBPP51606 427 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 DEFA1P59665 94 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 DEFA3P59666 94 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 LSM3P62310 102 aaKnown RBP9.53□□□□□ -0.88
SYNE1-230ENST00000495090 CHRNEQ04844 493 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 KIAA0040Q15053 153 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 TRIP4Q15650 581 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-230ENST00000495090 PCSK7Q16549 785 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 SMU1Q2TAY7 513 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 NOMO2Q5JPE7 1267 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.53□□□□□ -0.88
SYNE1-230ENST00000495090 ARTNQ5T4W7 220 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 DESI1Q6ICB0 168 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 ZNF544Q6NX49 715 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 GPRIN3Q6ZVF9 776 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 USP43Q70EL4 1123 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 LRRC8DQ7L1W4 858 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 TAS2R42Q7RTR8 314 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 CHPFQ8IZ52 775 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 CLIP4Q8N3C7 705 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 AMER2Q8N7J2 671 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 RTL3Q8N8U3 475 aaKnown RBP9.53□□□□□ -0.88
SYNE1-230ENST00000495090 OR7G1Q8NGA0 311 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 DNAJB8Q8NHS0 232 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 PPTC7Q8NI37 304 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 FRS2Q8WU20 508 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 RNF34Q969K3 372 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 EMID1Q96A84 441 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-230ENST00000495090 PDLIM5Q96HC4 596 aaKnown RBP9.53□□□□□ -0.88
SYNE1-230ENST00000495090 ITPAQ9BY32 194 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 ACTL8Q9H568 366 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 CRTAC1Q9NQ79 661 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 CDH9Q9ULB4 789 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 CRYL1Q9Y2S2 319 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms