RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 PPM1MQ96MI6 270 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 PSMG3-AS1Q96PY0 264 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 ANP32EQ9BTT0 268 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 TUBB2BQ9BVA1 445 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 FSD1LQ9BXM9 530 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 GOLPH3Q9H4A6 298 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 KIR3DX1Q9H7L2 352 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 KCND1Q9NSA2 647 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 RSPH14Q9UHP6 348 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 SLC24A2Q9UI40 661 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 INTUQ9ULD6 942 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 FARSAQ9Y285 508 aaKnown RBP12.09□□□□□ -0.47
CPSF3-204ENST00000489403 ARL5AQ9Y689 179 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 FLNCQ14315 2725 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 NBASA2RRP1 2371 aa12.08□□□□□ -0.47
CPSF3-204ENST00000489403 ARGFXA6NJG6 315 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 HACD1B0YJ81 288 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 STX7O15400 261 aaKnown RBP12.08□□□□□ -0.48
CPSF3-204ENST00000489403 SGTAO43765 313 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 SRP72O76094 671 aaKnown RBP12.08□□□□□ -0.48
CPSF3-204ENST00000489403 AGTP01019 485 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 TPM1P09493 284 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 SLC35G4P0C7Q5 338 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 ARCN1P48444 511 aaKnown RBP12.08□□□□□ -0.48
CPSF3-204ENST00000489403 MARCKSL1P49006 195 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 PDE1BQ01064 536 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 ABRQ12979 859 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 BCL7AQ4VC05 210 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 PRAMEF17Q5VTA0 474 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 IZUMO3Q5VZ72 239 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 VSTM4Q8IW00 320 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 CARFQ8N187 725 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 LILRA3Q8N6C8 439 aaPredicted RBP12.08□□□□□ -0.48
CPSF3-204ENST00000489403 SLC38A9Q8NBW4 561 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 OR4K2Q8NGD2 314 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 ZFPM2Q8WW38 1151 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 LINC00615Q96LM1 132 aaPredicted RBP12.08□□□□□ -0.48
CPSF3-204ENST00000489403 RMDN2Q96LZ7 410 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 SLC25A23Q9BV35 468 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 FICDQ9BVA6 458 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 GBA3Q9H227 469 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 C10orf88Q9H8K7 445 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 MLXIPLQ9NP71 852 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 LATS2Q9NRM7 1088 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 SOHLH2Q9NX45 425 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 FAM8A1Q9UBU6 413 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 FKBPLQ9UIM3 349 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 TRHDEQ9UKU6 1024 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 ACSL5Q9ULC5 683 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 BTRCQ9Y297 605 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 ALG6Q9Y672 507 aa12.08□□□□□ -0.48
CPSF3-204ENST00000489403 KLHL33A6NCF5 533 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 TTLL8A6PVC2 850 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 DDX3YO15523 660 aaKnown RBP12.07□□□□□ -0.48
CPSF3-204ENST00000489403 POLR2CP19387 275 aaPredicted RBP12.07□□□□□ -0.48
CPSF3-204ENST00000489403 LPOP22079 712 aaPredicted RBP12.07□□□□□ -0.48
CPSF3-204ENST00000489403 GNLYP22749 145 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 RBL1P28749 1068 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 PTGIRP43119 386 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 CCL11P51671 97 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 PGDP52209 483 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 GEMP55040 296 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 HADHBP55084 474 aaKnown RBP12.07□□□□□ -0.48
CPSF3-204ENST00000489403 XIAPP98170 497 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 OLIG2Q13516 323 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 TAF1AQ15573 450 aaPredicted RBP12.07□□□□□ -0.48
CPSF3-204ENST00000489403 NADK2Q4G0N4 442 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 TMTC4Q5T4D3 741 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 CAPRIN2Q6IMN6 1127 aaKnown RBP12.07□□□□□ -0.48
CPSF3-204ENST00000489403 LCN10Q6JVE6 187 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 ARMC6Q6NXE6 501 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 DAAM2Q86T65 1068 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 CCDC50Q8IVM0 306 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 KATNAL2Q8IYT4 538 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 OR8K5Q8NH50 307 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 CPT1CQ8TCG5 803 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 ADAMTS17Q8TE56 1095 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 MR1Q95460 341 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 LRFN5Q96NI6 719 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 TLR10Q9BXR5 811 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 ING2Q9H160 280 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 CHST8Q9H2A9 424 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 ASB8Q9H765 288 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 ACSS2Q9NR19 701 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 POMT2Q9UKY4 750 aa12.07□□□□□ -0.48
CPSF3-204ENST00000489403 PCDHGA9Q9Y5G4 932 aaKnown RBP12.07□□□□□ -0.48
CPSF3-204ENST00000489403 MED13Q9UHV7 2174 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 C2orf81A6NN90 581 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 AGAP14A8MT82 685 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 VPS4BO75351 444 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 SORBS2O94875 1100 aaKnown RBP12.06□□□□□ -0.48
CPSF3-204ENST00000489403 ZRANB2O95218 330 aaKnown RBP eCLIP12.06□□□□□ -0.48
CPSF3-204ENST00000489403 POLBP06746 335 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 CDH3P22223 829 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 NDUFS1P28331 727 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 ADRA1AP35348 466 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 RORAP35398 523 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 PRLHRP49683 370 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 GSDMDP57764 484 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 GSE1Q14687 1217 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms