RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 DHX9Q08211 1270 aaKnown RBP14.44□□□□□ -0.1
USP4-212ENST00000486549 BOP1Q14137 746 aaKnown RBP14.44□□□□□ -0.1
USP4-212ENST00000486549 GPR18Q14330 331 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 MORF4L2Q15014 288 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 BBS9Q3SYG4 887 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 ANKRD20A4Q4UJ75 823 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 SYTL3Q4VX76 610 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 DNAJC21Q5F1R6 531 aaKnown RBP14.44□□□□□ -0.1
USP4-212ENST00000486549 MRNIPQ6NTE8 343 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 NAPRTQ6XQN6 538 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 LRRC69Q6ZNQ3 347 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 NCSTNQ92542 709 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 SIGLEC10Q96LC7 697 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 PWWP2AQ96N64 755 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 STRADBQ9C0K7 418 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 SLC40A1Q9NP59 571 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 TMEM9Q9P0T7 183 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 LHX6Q9UPM6 363 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 SNX24Q9Y343 169 aa14.44□□□□□ -0.1
USP4-212ENST00000486549 A0A087WV48 116 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 CCDC187A0A096LP49 1063 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 C17orf113A0A1B0GUU1 675 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 RAD51CO43502 376 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 SEC31AO94979 1220 aaKnown RBP14.43□□□□□ -0.1
USP4-212ENST00000486549 F7P08709 466 aaPredicted RBP14.43□□□□□ -0.1
USP4-212ENST00000486549 HOXB3P14651 431 aaPredicted RBP14.43□□□□□ -0.1
USP4-212ENST00000486549 TYRP1P17643 537 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 PDHA2P29803 388 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 CCKBRP32239 447 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 ARCN1P48444 511 aaKnown RBP14.43□□□□□ -0.1
USP4-212ENST00000486549 EPHA4P54764 986 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 CSE1LP55060 971 aaKnown RBP14.43□□□□□ -0.1
USP4-212ENST00000486549 EIF3BP55884 814 aaKnown RBP14.43□□□□□ -0.1
USP4-212ENST00000486549 CFHR1Q03591 330 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 CKAP4Q07065 602 aaKnown RBP14.43□□□□□ -0.1
USP4-212ENST00000486549 PLCL1Q15111 1095 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 MSS51Q4VC12 460 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 SNAP47Q5SQN1 464 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 HP1BP3Q5SSJ5 553 aaPredicted RBP14.43□□□□□ -0.1
USP4-212ENST00000486549 ARMC3Q5W041 872 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 HIBCHQ6NVY1 386 aaPredicted RBP14.43□□□□□ -0.1
USP4-212ENST00000486549 ZNF449Q6P9G9 518 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 ZNF574Q6ZN55 896 aaPredicted RBP14.43□□□□□ -0.1
USP4-212ENST00000486549 SDCCAG8Q86SQ7 713 aaPredicted RBP14.43□□□□□ -0.1
USP4-212ENST00000486549 SLITRK4Q8IW52 837 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 KRT222Q8N1A0 295 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 RCBTB1Q8NDN9 531 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 LKAAEAR1Q8TD35 194 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 CCDC74BQ96LY2 380 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 DPH5Q9H2P9 285 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 CDC23Q9UJX2 597 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 RAXQ9Y2V3 346 aa14.43□□□□□ -0.1
USP4-212ENST00000486549 IGHV5-10-1A0A0J9YXX1 117 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 ZCWPW2A0A1B0GU75 182 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 A0A1W2PNU3 283 aaPredicted RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 FAM187AA6NFU0 413 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 IQCF5A8MTL0 148 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 F8W8V4 182 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 TMX2-CTNND1H3BSU7 103 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 IFRD1O00458 451 aaPredicted RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 PRMT5O14744 637 aaPredicted RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 BRINP1O60477 761 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 USP1O94782 785 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 UBXN7O94888 489 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 GSTM1P09488 218 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 HGFP14210 728 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 AMD1P17707 334 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 PGAM1P18669 254 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 RPL21P46778 160 aaKnown RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 GSTM4Q03013 218 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 ZFP36L1Q07352 338 aaKnown RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 THOC5Q13769 683 aaKnown RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 KRT33BQ14525 404 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 CLPPQ16740 277 aaPredicted RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 ZNF658BQ4V348 819 aaPredicted RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 ZNF470Q6ECI4 717 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 PTRHD1Q6GMV3 140 aaKnown RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 NEPROQ6NW34 567 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 RAB11FIP2Q7L804 512 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 MAATS1Q7Z4T9 603 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 TMEM135Q86UB9 458 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 RBM12BQ8IXT5 1001 aaKnown RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 PDIK1LQ8N165 341 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 OR4D9Q8NGE8 314 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 WDR36Q8NI36 951 aaKnown RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 LIN37Q96GY3 246 aaPredicted RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 TSSK1BQ9BXA7 367 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 OR52A5Q9H2C5 316 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 POLR1BQ9H9Y6 1135 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 UCK1Q9HA47 277 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 C20orf96Q9NUD7 363 aaPredicted RBP14.42□□□□□ -0.1
USP4-212ENST00000486549 KLHL3Q9UH77 587 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 GNPTGQ9UJJ9 305 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 LOXL2Q9Y4K0 774 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 WDFY3Q8IZQ1 3526 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 FREM2Q5SZK8 3169 aa14.42□□□□□ -0.1
USP4-212ENST00000486549 DMXL2Q8TDJ6 3036 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 ANKRD11Q6UB99 2663 aaPredicted RBP14.41□□□□□ -0.1
USP4-212ENST00000486549 A8MU76 341 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 LIN7AO14910 233 aaPredicted RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms