RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 PMPCBO75439 489 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 IPO7O95373 1038 aaKnown RBP12.69□□□□□ -0.38
HDAC6-227ENST00000485102 SLC4A1P02730 911 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 GYPCP04921 128 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 TMEM253P0C7T8 217 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 UGT1A6P19224 532 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 UGT1A1P22309 533 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 UGT1A4P22310 534 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 CD68P34810 354 aaPredicted RBP12.69□□□□□ -0.38
HDAC6-227ENST00000485102 RORAP35398 523 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 PTGIRP43119 386 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 WNT3AP56704 352 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 NFE2L1Q14494 772 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 PLCL1Q15111 1095 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 PRKD1Q15139 912 aaPredicted RBP12.69□□□□□ -0.38
HDAC6-227ENST00000485102 TAZQ16635 292 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 LONRF2Q1L5Z9 754 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 GPRC6AQ5T6X5 926 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 JMJD6Q6NYC1 403 aaPredicted RBP12.69□□□□□ -0.38
HDAC6-227ENST00000485102 MED25Q71SY5 747 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 TMEM126BQ8IUX1 230 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 Q8NA96 180 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 CPT1BQ92523 772 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 MR1Q95460 341 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 PNPLA2Q96AD5 504 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 INSM2Q96T92 566 aaPredicted RBP12.69□□□□□ -0.38
HDAC6-227ENST00000485102 SMAD5Q99717 465 aaKnown RBP12.69□□□□□ -0.38
HDAC6-227ENST00000485102 DEF6Q9H4E7 631 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 UGT1A7Q9HAW7 530 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 UGT1A10Q9HAW8 530 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 UGT1A8Q9HAW9 530 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 C1GALT1Q9NS00 363 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 TCFL5Q9UL49 500 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 PSMD13Q9UNM6 376 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 ANKRD12Q6UB98 2062 aa12.69□□□□□ -0.38
HDAC6-227ENST00000485102 GLYATL1P3A0A0U1RQE8 302 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 MATN2O00339 956 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 MFAP3LO75121 409 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 TMEM63AO94886 807 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 CAPN1P07384 714 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 HLA-DPA1P20036 260 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 NDUFS1P28331 727 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 CA5AP35218 305 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 KPNA2P52292 529 aaKnown RBP12.68□□□□□ -0.38
HDAC6-227ENST00000485102 VAV2P52735 878 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 WASHC5Q12768 1159 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 CHAF1BQ13112 559 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 XRCC4Q13426 336 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 MESDQ14696 234 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 GPR19Q15760 415 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 PPP2R5EQ16537 467 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 SIRPB2Q5JXA9 342 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 HIST2H2BCQ6DN03 193 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 NPNTQ6UXI9 565 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 RHOT1Q8IXI2 618 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 FDCSPQ8NFU4 85 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 OR2L2Q8NH16 312 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 SLC35G2Q8TBE7 412 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 CPLX3Q8WVH0 158 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 MRGPRX2Q96LB1 330 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 PANX2Q96RD6 677 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 FCRL5Q96RD9 977 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 VAT1Q99536 393 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 DNAJC7Q99615 494 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 C19orf43Q9BQ61 176 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 DPH2Q9BQC3 489 aaPredicted RBP12.68□□□□□ -0.38
HDAC6-227ENST00000485102 PACSIN1Q9BY11 444 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 SLC29A3Q9BZD2 475 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 IMP3Q9NV31 184 aaKnown RBP12.68□□□□□ -0.38
HDAC6-227ENST00000485102 C5AR2Q9P296 337 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 G3BP2Q9UN86 482 aaKnown RBP12.68□□□□□ -0.38
HDAC6-227ENST00000485102 SNX7Q9UNH6 387 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 COLEC10Q9Y6Z7 277 aa12.68□□□□□ -0.38
HDAC6-227ENST00000485102 OR2AG2A6NM03 316 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 AGAP14A8MT82 685 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 TCP11X1B4DZS4 312 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 SLC1A1P43005 524 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 RRADP55042 308 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 TBX2Q13207 712 aaPredicted RBP12.67□□□□□ -0.38
HDAC6-227ENST00000485102 SLC1A5Q15758 541 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 BCL7AQ4VC05 210 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 ZNF789Q5FWF6 425 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 FAM182AQ5T1J6 154 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 ARMC6Q6NXE6 501 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 FAM151BQ6UXP7 276 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 CCDC170Q8IYT3 715 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 RBMXL3Q8N7X1 1067 aaKnown RBP12.67□□□□□ -0.38
HDAC6-227ENST00000485102 ENDOVQ8N8Q3 282 aaKnown RBP12.67□□□□□ -0.38
HDAC6-227ENST00000485102 ZNF398Q8TD17 642 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 TFB1MQ8WVM0 346 aaKnown RBP12.67□□□□□ -0.38
HDAC6-227ENST00000485102 CCDC42Q96M95 316 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 IP6K3Q96PC2 410 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 WWP1Q9H0M0 922 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 FANCEQ9HB96 536 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 SLAMF7Q9NQ25 335 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 ABHD10Q9NUJ1 306 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 PCMTD2Q9NV79 361 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 DDX56Q9NY93 547 aaKnown RBP12.67□□□□□ -0.38
HDAC6-227ENST00000485102 UBP1Q9NZI7 540 aa12.67□□□□□ -0.38
HDAC6-227ENST00000485102 POMT2Q9UKY4 750 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms