RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TMEM143Q96AN5 459 aa2.87□□□□□ -1.95
VPS50-216ENST00000484954 LINC00479Q96M42 142 aa2.87□□□□□ -1.95
VPS50-216ENST00000484954 NUDCD1Q96RS6 583 aa2.87□□□□□ -1.95
VPS50-216ENST00000484954 DNAJC18Q9H819 358 aa2.87□□□□□ -1.95
VPS50-216ENST00000484954 ATAD3AQ9NVI7 634 aa2.87□□□□□ -1.95
VPS50-216ENST00000484954 IRAK4Q9NWZ3 460 aa2.87□□□□□ -1.95
VPS50-216ENST00000484954 BARHL2Q9NY43 387 aa2.87□□□□□ -1.95
VPS50-216ENST00000484954 COQ3Q9NZJ6 369 aa2.87□□□□□ -1.95
VPS50-216ENST00000484954 ORC3Q9UBD5 711 aaPredicted RBP2.87□□□□□ -1.95
VPS50-216ENST00000484954 MTMR6Q9Y217 621 aa2.87□□□□□ -1.95
VPS50-216ENST00000484954 CMAHPQ9Y471 501 aa2.87□□□□□ -1.95
VPS50-216ENST00000484954 RNF215Q9Y6U7 377 aa2.87□□□□□ -1.95
VPS50-216ENST00000484954 COL2A1P02458 1487 aaPredicted RBP2.86□□□□□ -1.95
VPS50-216ENST00000484954 IGLV9-49A0A0B4J1Y8 123 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 PRSS51A0A1B0GVH4 220 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 NDUFAF8A1L188 74 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 SH2B2O14492 632 aaPredicted RBP2.86□□□□□ -1.95
VPS50-216ENST00000484954 TCERG1O14776 1098 aaKnown RBP2.86□□□□□ -1.95
VPS50-216ENST00000484954 NPHP1O15259 732 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 ARHGEF9O43307 516 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 GPC4O75487 556 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 TPPPO94811 219 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 EML2O95834 649 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 LAMP2P13473 410 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 PPARGP37231 505 aaPredicted RBP2.86□□□□□ -1.95
VPS50-216ENST00000484954 KRT32Q14532 448 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 ALFQ53S48 1182 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 CYP4A22Q5TCH4 519 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 JAKMIP3Q5VZ66 844 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 HAUS3Q68CZ6 603 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 CORO6Q6QEF8 472 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 IKBIPQ70UQ0 350 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 FASTKD5Q7L8L6 764 aaKnown RBP2.86□□□□□ -1.95
VPS50-216ENST00000484954 HACE1Q8IYU2 909 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 SCYL3Q8IZE3 742 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 KBTBD8Q8NFY9 601 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 TBC1D16Q8TBP0 767 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 UCMAQ8WVF2 138 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 GMPPAQ96IJ6 420 aaPredicted RBP2.86□□□□□ -1.95
VPS50-216ENST00000484954 CMTM3Q96MX0 182 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 VGLL1Q99990 258 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 ABHD6Q9BV23 337 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 ECHDC1Q9NTX5 307 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 PLCXD1Q9NUJ7 323 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 NPAP1Q9NZP6 1156 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 OGFRQ9NZT2 677 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 KLHL8Q9P2G9 620 aaPredicted RBP2.86□□□□□ -1.95
VPS50-216ENST00000484954 AASSQ9UDR5 926 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 FBXL17Q9UF56 701 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 ASIC3Q9UHC3 531 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 PCDHGA5Q9Y5G8 931 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 SPIN1Q9Y657 262 aaPredicted RBP2.86□□□□□ -1.95
VPS50-216ENST00000484954 PRSS21Q9Y6M0 314 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 RUSC2Q8N2Y8 1516 aa2.86□□□□□ -1.95
VPS50-216ENST00000484954 SOS1Q07889 1333 aaPredicted RBP2.86□□□□□ -1.95
VPS50-216ENST00000484954 IGHV4-61A0A0C4DH41 118 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 J3KRW8 73 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 HS6ST1O60243 411 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 GH2P01242 217 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 IGHV4-59P01825 116 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 H1F0P07305 194 aaKnown RBP2.85□□□□□ -1.95
VPS50-216ENST00000484954 SRPRAP08240 638 aaKnown RBP2.85□□□□□ -1.95
VPS50-216ENST00000484954 HMBSP08397 361 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 DPEP1P16444 411 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 TMEM11P17152 192 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 CDH2P19022 906 aaPredicted RBP2.85□□□□□ -1.95
VPS50-216ENST00000484954 PSMA4P25789 261 aaKnown RBP2.85□□□□□ -1.95
VPS50-216ENST00000484954 KRT2P35908 639 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 BMXP51813 675 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 DSCR10P59022 87 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 LGALS3BPQ08380 585 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 PNRC1Q12796 327 aaPredicted RBP2.85□□□□□ -1.95
VPS50-216ENST00000484954 DCAF10Q5QP82 559 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 Q6ZSR9 355 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 GPALPP1Q8IXQ4 340 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 ZFAND2BQ8WV99 257 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 C18orf12Q96KH6 178 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 TRAF4Q9BUZ4 470 aaPredicted RBP2.85□□□□□ -1.95
VPS50-216ENST00000484954 OLFML3Q9NRN5 406 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 DIAPH3Q9NSV4 1193 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 PNMA2Q9UL42 364 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 SMAD5-AS1Q9Y6J3 95 aa2.85□□□□□ -1.95
VPS50-216ENST00000484954 SEC23IPQ9Y6Y8 1000 aaKnown RBP2.85□□□□□ -1.95
VPS50-216ENST00000484954 GIMAP1-GIMAP5A0A087WTJ2 511 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 A0A0J9YWU9 116 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 CCDC189A1A4V9 331 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 PLEKHD1A6NEE1 506 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 H7C423 109 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 TO15178 435 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 MOCS3O95396 460 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 DDX58O95786 925 aaKnown RBP2.84□□□□□ -1.95
VPS50-216ENST00000484954 RAF1P04049 648 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 FAM157CP0CG43 387 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 ACTN1P12814 892 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 SP100P23497 879 aaPredicted RBP2.84□□□□□ -1.95
VPS50-216ENST00000484954 PON1P27169 355 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 TM4SF1P30408 202 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 GARSP41250 739 aaKnown RBP2.84□□□□□ -1.95
VPS50-216ENST00000484954 SUOXP51687 545 aa2.84□□□□□ -1.95
VPS50-216ENST00000484954 CDH8P55286 799 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms