RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 TPM4P67936 248 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 BASP1P80723 227 aaKnown RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 DPTQ07507 201 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 PPIDQ08752 370 aaKnown RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 DNAJC3Q13217 504 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 SRSF5Q13243 272 aaKnown RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 PPIL2Q13356 520 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 LARS2Q15031 903 aaKnown RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 NCF4Q15080 339 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 FASTKD1Q53R41 847 aaKnown RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 PLAC9Q5JTB6 97 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 Q5PR19 223 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 TREML2Q5T2D2 321 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 C6orf163Q5TEZ5 329 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 PRAMEF8Q5VWM4 474 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 TBC1D9BQ66K14 1250 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 SLC9A4Q6AI14 798 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 RAET1GQ6H3X3 334 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 ABLIM2Q6H8Q1 611 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 PSRC1Q6PGN9 363 aaPredicted RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 WDR53Q7Z5U6 358 aaPredicted RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 GPR142Q7Z601 462 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 ADAMTSL2Q86TH1 951 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 IQCHQ86VS3 1027 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 ARHGAP12Q8IWW6 846 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 HACE1Q8IYU2 909 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 OFCC1Q8IZS5 231 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 C17orf47Q8NEP4 570 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 STEAP2Q8NFT2 490 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 CMASQ8NFW8 434 aaPredicted RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 RDM1Q8NG50 284 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 OCC1Q8TAD7 63 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 EXOC6Q8TAG9 804 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 DNAJA4Q8WW22 397 aaPredicted RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 SELENOMQ8WWX9 145 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 CAVIN3Q969G5 261 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 RFKQ969G6 155 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 FAM149B1Q96BN6 582 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 SAAL1Q96ER3 474 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 RRNAD1Q96FB5 475 aaKnown RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 DTD2Q96FN9 168 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 ERO1AQ96HE7 468 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 SLC41A2Q96JW4 573 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 ZBTB45Q96K62 511 aaPredicted RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 KLHL15Q96M94 604 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 QRFPRQ96P65 431 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 NUDT22Q9BRQ3 303 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 ADNPQ9H2P0 1102 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 VCX2Q9H322 139 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 SLITRK6Q9H5Y7 841 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 RPF1Q9H9Y2 349 aaKnown RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 EPB41L5Q9HCM4 733 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 PANK4Q9NVE7 773 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 DNAJC17Q9NVM6 304 aaKnown RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 VPS18Q9P253 973 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 CRNNQ9UBG3 495 aaPredicted RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 STEAP1Q9UHE8 339 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 KCNK6Q9Y257 313 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.09□□□□□ -1.75
VPS41-212ENST00000482217 U3KQV3 271 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 KIF27Q86VH2 1401 aa4.09□□□□□ -1.75
VPS41-212ENST00000482217 A0A087WZY1 265 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.08□□□□□ -1.76
VPS41-212ENST00000482217 PNMA6EA0A0J9YXQ4 647 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 A0A1W2PPW3 197 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 SBNO1A3KN83 1393 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 GRID2IPA4D2P6 1211 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 TMEM191CA6NGB0 347 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 GAGE10A6NGK3 116 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 FAM90A8PA6NJQ4 464 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 NPIPB13A6NJU9 1138 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 LRRC53A6NM62 1247 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 ANXA2P2A6NMY6 339 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 SLC38A8A6NNN8 435 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 NPIPB4C9JG80 1138 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 E9PI62 339 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 PLRG1O43660 514 aaKnown RBP4.08□□□□□ -1.76
VPS41-212ENST00000482217 USP12O75317 370 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 ECI2O75521 394 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 TOM1L1O75674 476 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 CBR3O75828 277 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 CIB2O75838 187 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 TJP3O95049 919 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 OR5F1O95221 314 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 CXCL14O95715 111 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 KRT8P05787 483 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 ASNSP08243 561 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 FAM90A13PP0C7W8 464 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 FAM90A24PP0C7X0 464 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 C8orf89P0DMQ9 161 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 PRKAR1AP10644 381 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 CLUP10909 449 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 RALBP11234 206 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 POU2F1P14859 743 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 AREGP15514 252 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 VCLP18206 1134 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 ADRA2CP18825 462 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 ITIH1P19827 911 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 DRD5P21918 477 aa4.08□□□□□ -1.76
VPS41-212ENST00000482217 CALB2P22676 271 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms