RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 KRT33BQ14525 404 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 SLC5A9Q2M3M2 681 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 MYLK3Q32MK0 819 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 RFTN2Q52LD8 501 aaPredicted RBP13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 SETMARQ53H47 684 aaPredicted RBP13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 PAGE3Q5JUK9 113 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 METTL21CQ5VZV1 264 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 C22orf39Q6P5X5 142 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 CCDC149Q6ZUS6 474 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 CFAP206Q8IYR0 622 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 OR10A6Q8NH74 314 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 ITFG1Q8TB96 612 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 LMCD1Q9NZU5 365 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 SCHIP1Q9P0W5 487 aaPredicted RBP13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 GNPTGQ9UJJ9 305 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 TMEM98Q9Y2Y6 226 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 H3BNC9 293 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 FBP2O00757 339 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 MAP3K13O43283 966 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 LYNP07948 512 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 IST1P53990 364 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 LRRC74AQ0VAA2 488 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 UAP1L1Q3KQV9 507 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 IER5LQ5T953 404 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 CRTC1Q6UUV9 634 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 RNF111Q6ZNA4 994 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 TMEM150AQ86TG1 271 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 STK32CQ86UX6 486 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 SFTPA1Q8IWL2 248 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 EXD2Q9NVH0 621 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 GID8Q9NWU2 228 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 VPS9D1Q9Y2B5 631 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 WASH4PA8MWX3 477 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 TRBC1P01850 177 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 OGNP20774 298 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 PTGER3P43115 390 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 BDKRB1P46663 353 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 ATP6V0D1P61421 351 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 LIPEQ05469 1076 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 C2orf27AQ580R0 203 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 BEND5Q7L4P6 421 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 CHPFQ8IZ52 775 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 DCAF4L2Q8NA75 395 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 AP2M1Q96CW1 435 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 BIRC8Q96P09 236 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 ATOH8Q96SQ7 321 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 FAM83DQ9H4H8 585 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 STN1Q9H668 368 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 PDFQ9HBH1 243 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 EYSQ5T1H1 3165 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 A0A1B0GTW7 788 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 ABHD14A-ACY1A0A1B0GW23 586 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 CFAP99D6REC4 459 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 MMP20O60882 483 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 WFS1O76024 890 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 CA3P07451 260 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 COL6A1P12109 1028 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 MESP2Q0VG99 397 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 XKR6Q5GH73 641 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 GPRC6AQ5T6X5 926 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 AFMIDQ63HM1 303 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 ASTLQ6HA08 431 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 CNTN4Q8IWV2 1026 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 LIX1Q8N485 282 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 TEX26Q8N6G2 289 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 NRTNQ99748 197 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 TRIM4Q9C037 500 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 ARIH1Q9Y4X5 557 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 BACE2Q9Y5Z0 518 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 STK16O75716 305 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 CD160O95971 181 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 EPHX1P07099 455 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 ANXA5P08758 320 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 OR56A5P0C7T3 313 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 MYCLP1P12525 358 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 NR4A1P22736 598 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 PPM1AP35813 382 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 NRIP1P48552 1158 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 POLR2JP52435 117 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 MRPS35P82673 323 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 PTCHD3Q3KNS1 767 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 CBR4Q8N4T8 237 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 Q9H521 79 aa13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 DUS2Q9NX74 493 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 MAGED1Q9Y5V3 778 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-211ENST00000471947 MAGEA13PA6NCF6 341 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 TARM1B6A8C7 271 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 PAPSS2O95340 614 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 ESR1P03372 595 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 PAX3P23760 479 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 MAGEA12P43365 314 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 ALDH9A1P49189 494 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 TRIM25Q14258 630 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 SAMD4BQ5PRF9 694 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 TMEM220Q6QAJ8 160 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 ADAMTSL2Q86TH1 951 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 VRK3Q8IV63 474 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 CPSF7Q8N684 471 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 PHC3Q8NDX5 983 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 EGLN2Q96KS0 407 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms