RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 TNK1Q13470 666 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 BAATQ14032 418 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 INPP5AQ14642 412 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 GGTA1PQ4G0N0 100 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 FBXO43Q4G163 708 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 PLCZ1Q86YW0 608 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 UBA3Q8TBC4 463 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 TMEM143Q96AN5 459 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 DHRS1Q96LJ7 313 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 TMEM74Q96NL1 305 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 EGFL8Q99944 293 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 UPF3AQ9H1J1 476 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 KAT8Q9H7Z6 458 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 IL1RL2Q9HB29 575 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ACOT13Q9NPJ3 140 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 RHBDL2Q9NX52 303 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 TSC22D4Q9Y3Q8 395 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF236Q9UL36 1845 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 LDLRP01130 860 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 THRBP10828 461 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 MGAT1P26572 445 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ERP29P30040 261 aaKnown RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 FGF9P31371 208 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 BACE1P56817 501 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 UBE3AQ05086 875 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 FSCN1Q16658 493 aaKnown RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ARMC6Q6NXE6 501 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 TTC33Q6PID6 262 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ARMCX2Q7L311 632 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 C11orf96Q7Z7L8 435 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 KCNMB4Q86W47 210 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ARMC8Q8IUR7 673 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 EFCAB3Q8N7B9 438 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 CPPED1Q9BRF8 314 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 FUZQ9BT04 418 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 MED18Q9BUE0 208 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 EMILIN2Q9BXX0 1053 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 DERL2Q9GZP9 239 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 GLOD4Q9HC38 313 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 FAM118AQ9NWS6 357 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 CNOT2Q9NZN8 540 aaKnown RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 TBX19O60806 448 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 TPPPO94811 219 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 PRKCBP05771 671 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 LTA4HP09960 611 aaKnown RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ATP6V1B1P15313 513 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 CD96P40200 585 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 RAG2P55895 527 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 KCNAB2Q13303 367 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 CATSPEREQ5SY80 951 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF770Q6IQ21 691 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 HEATR4Q86WZ0 1026 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ANKRD49Q8WVL7 239 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 FAM122AQ96E09 287 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 PIGVQ9NUD9 493 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 LEF1Q9UJU2 399 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 TRBV5-4A0A0C4DH59 114 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 SUPT3HB4E1H0 165 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 PRMT5O14744 637 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 HAT1O14929 419 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 LDB2O43679 373 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 EFEMP2O95967 443 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 NFICP08651 508 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ZDHHC11BP0C7U3 371 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 CASP3P42574 277 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 OR4D2P58180 307 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 SH3BP2P78314 561 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 DHODHQ02127 395 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 MTM1Q13496 603 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 MAD2L1BPQ15013 274 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 GOLGA7BQ2TAP0 167 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 FUT11Q495W5 492 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 C6orf136Q5SQH8 315 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 CCNYL1Q8N7R7 359 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 WDR48Q8TAF3 677 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 GIPC2Q8TF65 315 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 MCCC1Q96RQ3 725 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ZBTB18Q99592 522 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 JAM3Q9BX67 310 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 RACGAP1Q9H0H5 632 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ABCG4Q9H172 646 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ARMC7Q9H6L4 198 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 OPTCQ9UBM4 332 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 SNX7Q9UNH6 387 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 A0A0U1RQS6 177 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ERVH48-1M5A8F1 160 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 TNFRSF10BO14763 440 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 FZD6O60353 706 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 TAL1P17542 331 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 MAP4P27816 1152 aaKnown RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ETFBP38117 255 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 STARD3Q14849 445 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM132BQ14DG7 1078 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 PPP1R3AQ16821 1122 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 CDONQ4KMG0 1287 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF470Q6ECI4 717 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 GALNT18Q6P9A2 607 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 UBQLNLQ8IYU4 475 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ESX1Q8N693 406 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms