RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SLC39A11Q8N1S5 342 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 FAM47BQ8NA70 645 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 PDPRQ8NCN5 879 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 TRPV3Q8NET8 790 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 TSPAN14Q8NG11 270 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 TFAP2CQ92754 450 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 PPM1MQ96MI6 270 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 EGFL8Q99944 293 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 CFHR5Q9BXR6 569 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 ANKRD60Q9BZ19 345 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 RBM38Q9H0Z9 239 aaKnown RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 ABCG8Q9H221 673 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 RPF2Q9H7B2 306 aaKnown RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 HEBP1Q9NRV9 189 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 SMOXQ9NWM0 555 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 GNPTGQ9UJJ9 305 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 OAZ3Q9UMX2 235 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 POLR3HQ9Y535 204 aaPredicted RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 PDE4DIPQ5VU43 2346 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 GLYATL1P3A0A0U1RQE8 302 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 RNF103-CHMP3A0A140T963 221 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 NRG2O14511 850 aaPredicted RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 ANKRD28O15084 1053 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 BNIP3LO60238 219 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 OLFM2O95897 454 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 OTCP00480 354 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 RPS3P23396 243 aaKnown RBP eCLIP8.8□□□□□ -1
SYNE1-217ENST00000466159 HRH2P25021 359 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 GABRR2P28476 465 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 HMOX2P30519 316 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 CD70P32970 193 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 CLCN2P51788 898 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 NR1H2P55055 460 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 EEFSECP57772 596 aaKnown RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 EMX2Q04743 252 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 SELPLGQ14242 412 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 INTS11Q5TA45 600 aaKnown RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 DLEU7Q6UYE1 221 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 MBOAT1Q6ZNC8 495 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 GAREM2Q75VX8 874 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 TCEAL8Q8IYN2 117 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 ADGRG2Q8IZP9 1017 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 ZNF296Q8WUU4 475 aaPredicted RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 ISG20Q96AZ6 181 aaKnown RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 VWCEQ96DN2 955 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 CENPNQ96H22 339 aaPredicted RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 ZNF558Q96NG5 402 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 SEPHS2Q99611 448 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 SEZ6LQ9BYH1 1024 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 FAM126AQ9BYI3 521 aaPredicted RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 MRPL17Q9NRX2 175 aaKnown RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 FARSBQ9NSD9 589 aaKnown RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 CRLS1Q9UJA2 301 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 DOCK6Q96HP0 2047 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 TRBV5-4A0A0C4DH59 114 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 NPIPB15A6NHN6 443 aaPredicted RBP8.79□□□□□ -1
SYNE1-217ENST00000466159 H3BNH8 94 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 H3BSA7 217 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 ACOX3O15254 700 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 TEX28O15482 410 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 GLUD1P00367 558 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 URODP06132 367 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 CKMP06732 381 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 GPIP06744 558 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 ENO2P09104 434 aaPredicted RBP8.79□□□□□ -1
SYNE1-217ENST00000466159 SLC2A4P14672 509 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 GJA1P17302 382 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 DGKAP23743 735 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 CTSOP43234 321 aaPredicted RBP8.79□□□□□ -1
SYNE1-217ENST00000466159 RGS4P49798 205 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 STK19P49842 368 aaPredicted RBP8.79□□□□□ -1
SYNE1-217ENST00000466159 MTPNP58546 118 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 BIRC2Q13490 618 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 SPATS1Q496A3 300 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 GPRC6AQ5T6X5 926 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 HID1Q8IV36 788 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 HS6ST3Q8IZP7 471 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 ZBTB2Q8N680 514 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 GOLM1Q8NBJ4 401 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 GPR26Q8NDV2 337 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 BIRC7Q96CA5 298 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 SH3GL3Q99963 347 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 VCX3AQ9NNX9 186 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 PNPLA3Q9NST1 481 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 CFAP97Q9P2B7 532 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 INTS6Q9UL03 887 aaKnown RBP8.79□□□□□ -1
SYNE1-217ENST00000466159 PADI4Q9UM07 663 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 MYRFQ9Y2G1 1151 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 CCL27Q9Y4X3 112 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 OARD1Q9Y530 152 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.79□□□□□ -1
SYNE1-217ENST00000466159 KLHL33A6NCF5 533 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 CLIC3O95833 236 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 CDH15P55291 814 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 RPL38P63173 70 aaKnown RBP8.79□□□□□ -1
SYNE1-217ENST00000466159 HMGCS1Q01581 520 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 TLE2Q04725 743 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 PTGR1Q14914 329 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 ATP6AP1Q15904 470 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 PYCR3Q53H96 274 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms