RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TIAL1Q01085 375 aaKnown RBP eCLIP15.48■□□□□ 0.07
USP40-206ENST00000443711 HSPA14Q0VDF9 509 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 DNAJC3Q13217 504 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 PDAP1Q13442 181 aaKnown RBP15.48■□□□□ 0.07
USP40-206ENST00000443711 BMPR2Q13873 1038 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 CASP8Q14790 479 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 TCEA2Q15560 299 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 SLC30A9Q6PML9 568 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 LVRNQ6Q4G3 990 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 LRIG3Q6UXM1 1119 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 NAPRTQ6XQN6 538 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 FAM83HQ6ZRV2 1179 aaPredicted RBP15.48■□□□□ 0.07
USP40-206ENST00000443711 HDXQ7Z353 690 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 CROCCP2Q86T23 111 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 RIBC1Q8N443 379 aaPredicted RBP15.48■□□□□ 0.07
USP40-206ENST00000443711 SIDT2Q8NBJ9 832 aaKnown RBP15.48■□□□□ 0.07
USP40-206ENST00000443711 OR2I1PQ8NGU4 316 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 EPS8L3Q8TE67 593 aaKnown RBP15.48■□□□□ 0.07
USP40-206ENST00000443711 TMEM159Q96B96 161 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 FAM136AQ96C01 138 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 MTBPQ96DY7 904 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 PHOX2BQ99453 314 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 OLFM1Q99784 485 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 COG4Q9H9E3 785 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 POPDC3Q9HBV1 291 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 PARD6AQ9NPB6 346 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 UCKL1Q9NWZ5 548 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 ST14Q9Y5Y6 855 aa15.48■□□□□ 0.07
USP40-206ENST00000443711 HMX2A2RU54 273 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 TRIM49D1C9J1S8 452 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 TPP1O14773 563 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 YY2O15391 372 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 SNX2O60749 519 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 CELA2BP08218 269 aaPredicted RBP15.47■□□□□ 0.07
USP40-206ENST00000443711 CRABP2P29373 138 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 IL9RQ01113 521 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 SUZ12Q15022 739 aaKnown RBP15.47■□□□□ 0.07
USP40-206ENST00000443711 AGAP9Q5VTM2 703 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 WASH2PQ6VEQ5 465 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 SLC25A45Q8N413 288 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 CD200R1Q8TD46 325 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 SAP25Q8TEE9 199 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 GLMNQ92990 594 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 ZIM3Q96PE6 472 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 CAB39LQ9H9S4 337 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 SYTL2Q9HCH5 934 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 WASH6PQ9NQA3 447 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 DNAAF2Q9NVR5 837 aaKnown RBP15.47■□□□□ 0.07
USP40-206ENST00000443711 TAAR2Q9P1P5 351 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 TBK1Q9UHD2 729 aa15.47■□□□□ 0.07
USP40-206ENST00000443711 PDZK1P1A8MUH7 402 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 PCDHGA12O60330 932 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 SLCO2B1O94956 709 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 SLC35G4P0C7Q5 338 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 CBSLP0DN79 551 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 SLC2A4P14672 509 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 TGM1P22735 817 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 TYK2P29597 1187 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 CBSP35520 551 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 PREPP48147 710 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 RGS4P49798 205 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 SERPINB8P50452 374 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 RAB10P61026 200 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 ZNF844Q08AG5 666 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 KRT71Q3SY84 523 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 AASDHQ4L235 1098 aaPredicted RBP15.46■□□□□ 0.07
USP40-206ENST00000443711 PAQR3Q6TCH7 311 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 ABRAXAS1Q6UWZ7 409 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 PRR23CQ6ZRP0 262 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 ASCL5Q7RTU5 278 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 KANSL1Q7Z3B3 1105 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 PIM3Q86V86 326 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 CEP97Q8IW35 865 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 LILRA3Q8N6C8 439 aaPredicted RBP15.46■□□□□ 0.07
USP40-206ENST00000443711 FAM46DQ8NEK8 389 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 GIMAP7Q8NHV1 300 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 SLC30A3Q99726 388 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 EDEM2Q9BV94 578 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 DPEP2Q9H4A9 486 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 GPAMQ9HCL2 828 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 TMEM9BQ9NQ34 198 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 PRDM8Q9NQV8 689 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 TBC1D29Q9UFV1 150 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 PCOLCE2Q9UKZ9 415 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 CDYLQ9Y232 598 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 PCDHGB2Q9Y5G2 931 aa15.46■□□□□ 0.07
USP40-206ENST00000443711 EP300Q09472 2414 aaPredicted RBP15.45■□□□□ 0.06
USP40-206ENST00000443711 OR5K4A6NMS3 321 aa15.45■□□□□ 0.06
USP40-206ENST00000443711 EIF3FO00303 357 aaPredicted RBP15.45■□□□□ 0.06
USP40-206ENST00000443711 ALPPL2P10696 532 aa15.45■□□□□ 0.06
USP40-206ENST00000443711 F3P13726 295 aa15.45■□□□□ 0.06
USP40-206ENST00000443711 ENO3P13929 434 aaPredicted RBP15.45■□□□□ 0.06
USP40-206ENST00000443711 RPL10P27635 214 aaKnown RBP15.45■□□□□ 0.06
USP40-206ENST00000443711 PDHA2P29803 388 aa15.45■□□□□ 0.06
USP40-206ENST00000443711 ATP5DP30049 168 aa15.45■□□□□ 0.06
USP40-206ENST00000443711 HALP42357 657 aa15.45■□□□□ 0.06
USP40-206ENST00000443711 IL2P60568 153 aa15.45■□□□□ 0.06
USP40-206ENST00000443711 GBX1Q14549 363 aa15.45■□□□□ 0.06
USP40-206ENST00000443711 ZKSCAN8Q15776 578 aaPredicted RBP15.45■□□□□ 0.06
USP40-206ENST00000443711 DEFB133Q30KQ1 61 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms