RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 PARVBQ9HBI1 364 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.93□□□□□ -0.98
COPB1-202ENST00000439561 CAB39Q9Y376 341 aaPredicted RBP8.93□□□□□ -0.98
COPB1-202ENST00000439561 SAMHD1Q9Y3Z3 626 aaKnown RBP8.93□□□□□ -0.98
COPB1-202ENST00000439561 QSER1Q2KHR3 1735 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 SOBPA7XYQ1 873 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 STX7O15400 261 aaKnown RBP8.93□□□□□ -0.98
COPB1-202ENST00000439561 BNIP3LO60238 219 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 MED26O95402 600 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 SERPINF2P08697 491 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 GRSF1Q12849 480 aaKnown RBP eCLIP8.93□□□□□ -0.98
COPB1-202ENST00000439561 TSTA3Q13630 321 aaPredicted RBP8.93□□□□□ -0.98
COPB1-202ENST00000439561 RCAN2Q14206 197 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 DDR2Q16832 855 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 CTU2Q2VPK5 515 aaKnown RBP8.93□□□□□ -0.98
COPB1-202ENST00000439561 C18orf21Q32NC0 220 aaPredicted RBP8.93□□□□□ -0.98
COPB1-202ENST00000439561 SPANXN2Q5MJ10 180 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 KANK2Q63ZY3 851 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 XAF1Q6GPH4 301 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 CYHR1Q6ZMK1 362 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 ARHGAP12Q8IWW6 846 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 CFAP52Q8N1V2 620 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.93□□□□□ -0.98
COPB1-202ENST00000439561 ARRDC4Q8NCT1 418 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 ZMIZ2Q8NF64 920 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 SLC13A3Q8WWT9 602 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 L3HYPDHQ96EM0 354 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 REXO5Q96IC2 774 aaKnown RBP8.93□□□□□ -0.98
COPB1-202ENST00000439561 ZBED3Q96IU2 234 aaPredicted RBP8.93□□□□□ -0.98
COPB1-202ENST00000439561 TSSK3Q96PN8 268 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 MFSD1Q9H3U5 465 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 KAT8Q9H7Z6 458 aaKnown RBP8.93□□□□□ -0.98
COPB1-202ENST00000439561 TMEM30AQ9NV96 361 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 PAK1IP1Q9NWT1 392 aaPredicted RBP8.93□□□□□ -0.98
COPB1-202ENST00000439561 EHD3Q9NZN3 535 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 PDP1Q9P0J1 537 aaPredicted RBP8.93□□□□□ -0.98
COPB1-202ENST00000439561 ERVK-11Q9UQG0 969 aa8.93□□□□□ -0.98
COPB1-202ENST00000439561 A0A0U1RQS6 177 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 SOCS7O14512 581 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 EEDO75530 441 aaKnown RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 CPSF4O95639 269 aaKnown RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 CPNE6O95741 557 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 CYP11A1P05108 521 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 LCKP06239 509 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 HSPA7P48741 367 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 AFF1P51825 1210 aaKnown RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 NUDT6P53370 316 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 SCAPQ12770 1279 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 DDX39BQ13838 428 aaKnown RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 ADPRMQ3LIE5 342 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 SPANXN4Q5MJ08 99 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 C10orf120Q5SQS8 335 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 UBE2UQ5VVX9 321 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 RBM23Q86U06 439 aaKnown RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 ZDHHC21Q8IVQ6 265 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 THEM5Q8N1Q8 247 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 PIK3C3Q8NEB9 887 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 TMEM40Q8WWA1 233 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 BHMTQ93088 406 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 LGALS12Q96DT0 336 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 ZNF419Q96HQ0 510 aaPredicted RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 NUAK2Q9H093 628 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 RNF38Q9H0F5 515 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 VTA1Q9NP79 307 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 KRT84Q9NSB2 600 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 VAPAQ9P0L0 249 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 RBPJLQ9UBG7 517 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 RRN3P2A6NIE6 340 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 EVPLLA8MZ36 301 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 PRMT5O14744 637 aaPredicted RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 SCAMP3O14828 347 aaKnown RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 IRAK2O43187 625 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 TREHO43280 583 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 USP2O75604 605 aaPredicted RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 RPP40O75818 363 aaKnown RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 CAPNS1P04632 268 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 SMIM10L2AP0DMW4 78 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 SMIM10L2BP0DMW5 78 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 TBX4P57082 545 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 CREB5Q02930 508 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 SEMA3BQ13214 749 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 CPSF6Q16630 551 aaKnown RBP eCLIP8.92□□□□□ -0.98
COPB1-202ENST00000439561 PHKG1Q16816 387 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 GPR153Q6NV75 609 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 ZNF549Q6P9A3 640 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 STX19Q8N4C7 294 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 AMER2Q8N7J2 671 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 RTL3Q8N8U3 475 aaKnown RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 PPTC7Q8NI37 304 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 ADAMTS16Q8TE57 1224 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 NT5C3BQ969T7 300 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 DOK1Q99704 481 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 PAAF1Q9BRP4 392 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 RHNO1Q9BSD3 238 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 TSEN34Q9BSV6 310 aaKnown RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 AMBRA1Q9C0C7 1298 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 POLR1EQ9GZS1 481 aaKnown RBP8.92□□□□□ -0.98
COPB1-202ENST00000439561 B3GNT3Q9Y2A9 372 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 UTRNP46939 3433 aa8.92□□□□□ -0.98
COPB1-202ENST00000439561 A0A1W2PQH9 124 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms