RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 C11orf91Q3C1V1 193 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 LRRC23Q53EV4 343 aaPredicted RBP8.24□□□□□ -1.09
CD44-208ENST00000428726 TMEM214Q6NUQ4 689 aaKnown RBP8.24□□□□□ -1.09
CD44-208ENST00000428726 LARP4Q71RC2 724 aaKnown RBP eCLIP8.24□□□□□ -1.09
CD44-208ENST00000428726 KBTBD6Q86V97 674 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 CYGBQ8WWM9 190 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 MTERF1Q99551 399 aaKnown RBP8.24□□□□□ -1.09
CD44-208ENST00000428726 IL21Q9HBE4 155 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 NLE1Q9NVX2 485 aaPredicted RBP8.24□□□□□ -1.09
CD44-208ENST00000428726 SPG21Q9NZD8 308 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 RNF103-CHMP3A0A140T963 221 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 LOC730098B7Z3J9 87 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 KPNA3O00505 521 aaPredicted RBP8.24□□□□□ -1.09
CD44-208ENST00000428726 TSPAN12O95859 305 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 HOXB8P17481 243 aaPredicted RBP8.24□□□□□ -1.09
CD44-208ENST00000428726 CR2P20023 1033 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 AQP1P29972 269 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 CHN2P52757 468 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 WDR5P61964 334 aaKnown RBP8.24□□□□□ -1.09
CD44-208ENST00000428726 ACVR1Q04771 509 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 GALNT1Q10472 559 aaPredicted RBP8.24□□□□□ -1.09
CD44-208ENST00000428726 GSTA3Q16772 222 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 CYP51A1Q16850 503 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 DOK6Q6PKX4 331 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 ARHGAP22Q7Z5H3 698 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 EGFL6Q8IUX8 553 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 FAM86B1Q8N7N1 296 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 SLC43A3Q8NBI5 491 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 KREMEN2Q8NCW0 462 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 ZFP28Q8NHY6 868 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 C2orf15Q8WU43 125 aaKnown RBP8.24□□□□□ -1.09
CD44-208ENST00000428726 FIG4Q92562 907 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 TOP1MTQ969P6 601 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 PBXIP1Q96AQ6 731 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 ULK4Q96C45 1275 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 RNF31Q96EP0 1072 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 VPS50Q96JG6 964 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 HHIPL1Q96JK4 782 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 RNF145Q96MT1 663 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 ZNF599Q96NL3 588 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 THUMPD3Q9BV44 507 aaKnown RBP8.24□□□□□ -1.09
CD44-208ENST00000428726 RETREG1Q9H6L5 497 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 CMTM6Q9NX76 183 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 IL17CQ9P0M4 197 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 BCAP29Q9UHQ4 241 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 NDUFAF1Q9Y375 327 aa8.24□□□□□ -1.09
CD44-208ENST00000428726 ILVBLA1L0T0 632 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 SEC22BO75396 215 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 ABCB1P08183 1280 aaPredicted RBP8.23□□□□□ -1.09
CD44-208ENST00000428726 HMOX2P30519 316 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 PIGFQ07326 219 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 GRIN2CQ14957 1233 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 TAF1AQ15573 450 aaPredicted RBP8.23□□□□□ -1.09
CD44-208ENST00000428726 MYLK3Q32MK0 819 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 PGS1Q32NB8 556 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 PYCR3Q53H96 274 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 ARSIQ5FYB1 569 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 KLHDC10Q6PID8 442 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 NCEH1Q6PIU2 408 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 AFTPHQ6ULP2 937 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 APLFQ8IW19 511 aaPredicted RBP8.23□□□□□ -1.09
CD44-208ENST00000428726 FAM20CQ8IXL6 584 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 SFRP1Q8N474 314 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 GPR156Q8NFN8 814 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 CDK5RAP1Q96SZ6 601 aaKnown RBP8.23□□□□□ -1.09
CD44-208ENST00000428726 TRMOQ9BU70 441 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 SLC6A13Q9NSD5 602 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 ARL15Q9NXU5 204 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 GALNT8Q9NY28 637 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 PSMD13Q9UNM6 376 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 AP4S1Q9Y587 144 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 CHD5Q8TDI0 1954 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 ANKRD36A6QL64 1941 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 NOTCH4Q99466 2003 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 NINQ8N4C6 2090 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 SOCS2O14508 198 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 PENKP01210 267 aaPredicted RBP8.23□□□□□ -1.09
CD44-208ENST00000428726 NTRK1P04629 796 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 TFAP2AP05549 437 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 GPX3P22352 226 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 CTNNB1P35222 781 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 OR4D2P58180 307 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 LRP8Q14114 963 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 PLEKHG6Q3KR16 790 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 C5orf22Q49AR2 442 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 TBCELQ5QJ74 424 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 TMEM215Q68D42 235 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 ANGPTL8Q6UXH0 198 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 Q6ZSR9 355 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 HMGN2P46Q86SG4 172 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 PGAM4Q8N0Y7 254 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 SLC39A11Q8N1S5 342 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 C10orf111Q8N326 155 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 MAGEE2Q8TD90 523 aaPredicted RBP8.23□□□□□ -1.09
CD44-208ENST00000428726 PIH1D2Q8WWB5 315 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 BADQ92934 168 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 SLCO4A1Q96BD0 722 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 FBXL20Q96IG2 436 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 LRRC3BQ96PB8 259 aa8.23□□□□□ -1.09
CD44-208ENST00000428726 NR1H4Q96RI1 486 aaPredicted RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms