RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 G3V2T6 193 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 ADAM12O43184 909 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 CYP7B1O75881 506 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 TOMM70O94826 608 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 RFC2P35250 354 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 PURAQ00577 322 aaKnown RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 DBPQ10586 325 aaPredicted RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 PHKG1Q16816 387 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 FAM214AQ32MH5 1076 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 RAB41Q5JT25 222 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 FAM45BPQ6NSW5 357 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 CYP20A1Q6UW02 462 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 RSPO2Q6UXX9 243 aaPredicted RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 TAS1R1Q7RTX1 841 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 SLCO6A1Q86UG4 719 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 ADGRG2Q8IZP9 1017 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 LIX1Q8N485 282 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 SMYD1Q8NB12 490 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 FAM45AQ8TCE6 357 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 SCUBE2Q9NQ36 999 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 ERVK-18Q9QC07 812 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 BAG5Q9UL15 447 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 ATP11BQ9Y2G3 1177 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 CFAP99D6REC4 459 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 DNTTP04053 509 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 NUP107P57740 925 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 AQP6Q13520 282 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 BOP1Q14137 746 aaKnown RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 HERC3Q15034 1050 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 TRIP4Q15650 581 aaPredicted RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 CTU2Q2VPK5 515 aaKnown RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 TMTC4Q5T4D3 741 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 TIGD7Q6NT04 549 aaPredicted RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 TMC5Q6UXY8 1006 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 Q6ZSR9 355 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 CACUL1Q86Y37 369 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 OR2T12Q8NG77 320 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 ZFP90Q8TF47 636 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 OMA1Q96E52 524 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 MYRFLQ96LU7 910 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 ATOH8Q96SQ7 321 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 SEZ6LQ9BYH1 1024 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 TRIM15Q9C019 465 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 C6orf62Q9GZU0 229 aaPredicted RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 NMRK2Q9NPI5 230 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 ITM2BQ9Y287 266 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 CCDC88CQ9P219 2028 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 ZSCAN9O15535 394 aaPredicted RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 RPP40O75818 363 aaKnown RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 NADKO95544 446 aaPredicted RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 PEX11BO96011 259 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 SERPINA1P01009 418 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 THRBP10828 461 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 DBTP11182 482 aaKnown RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 PTNP21246 168 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 MZF1P28698 734 aaPredicted RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 AXLP30530 894 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 ALDH3B2P48448 385 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 PLA2G16P53816 162 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 ARSFP54793 590 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 NFATC3Q12968 1075 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 PWP1Q13610 501 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 RNF219Q5W0B1 726 aaPredicted RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 NADSYN1Q6IA69 706 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 KLHL17Q6TDP4 642 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 SLC22A17Q8WUG5 538 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 ACDQ96AP0 544 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 AARSD1Q9BTE6 412 aaKnown RBP8.52□□□□□ -1.05
USP40-203ENST00000427112 FBXO10Q9UK96 956 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 SNX8Q9Y5X2 465 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 GPR45Q9Y5Y3 372 aa8.52□□□□□ -1.05
USP40-203ENST00000427112 CASP8AP2Q9UKL3 1982 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 ATG2BQ96BY7 2078 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 DOCK6Q96HP0 2047 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 A0A1W2PP18 115 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 M0R3G1 203 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 PAPSS2O95340 614 aaPredicted RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 ASGR1P07306 291 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 ZNF865P0CJ78 1059 aaPredicted RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 TACR1P25103 407 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 HMGB2P26583 209 aaKnown RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 ZNF157P51786 506 aaPredicted RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 IL2P60568 153 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 DAB2P98082 770 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 CD47Q08722 323 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 MAPKAPK3Q16644 382 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 SLC36A3Q495N2 470 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 AHSA2Q719I0 299 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 HS6ST3Q8IZP7 471 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 GPR156Q8NFN8 814 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 SLC16A10Q8TF71 515 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 MAL2Q969L2 176 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 CCDC126Q96EE4 140 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 OR52E6Q96RD3 313 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 FUNDC2Q9BWH2 189 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 TMEM121BQ9BXQ6 578 aaPredicted RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 PRKD2Q9BZL6 878 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 SMG9Q9H0W8 520 aaKnown RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 ACTR8Q9H981 624 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 SPATA7Q9P0W8 599 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms