RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 CTSCP53634 463 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 MRPL49Q13405 166 aaKnown RBP12.63□□□□□ -0.39
LINC00339-202ENST00000416769 TUBB3Q13509 450 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 LONRF2Q1L5Z9 754 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 ATP13A5Q4VNC0 1218 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 TIGD7Q6NT04 549 aaPredicted RBP12.63□□□□□ -0.39
LINC00339-202ENST00000416769 ABRAXAS1Q6UWZ7 409 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 TMC3Q7Z5M5 1100 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 LRRTM4Q86VH4 590 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 PPP1R3BQ86XI6 285 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 CREG2Q8IUH2 290 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 SLC38A9Q8NBW4 561 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 CCNYQ8ND76 341 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 CCHCR1Q8TD31 782 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 P3H4Q92791 437 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 MS4A14Q96JA4 679 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 MAP3K3Q99759 626 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 FRMD8P1Q9BZ68 369 aaPredicted RBP12.63□□□□□ -0.39
LINC00339-202ENST00000416769 EPB41L1Q9H4G0 881 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 UBP1Q9NZI7 540 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 KCND3Q9UK17 655 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 DNPEPQ9ULA0 475 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 PADI1Q9ULC6 663 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 PCDHGA6Q9Y5G7 932 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 CFAP20Q9Y6A4 193 aaKnown RBP12.63□□□□□ -0.39
LINC00339-202ENST00000416769 FER1L5A0AVI2 2057 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 CENPEQ02224 2701 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 PRRC2CQ9Y520 2896 aaKnown RBP12.62□□□□□ -0.39
LINC00339-202ENST00000416769 DOPEY1Q5JWR5 2465 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 URI1O94763 535 aaPredicted RBP12.62□□□□□ -0.39
LINC00339-202ENST00000416769 SORBS2O94875 1100 aaKnown RBP12.62□□□□□ -0.39
LINC00339-202ENST00000416769 MT-CYBP00156 380 aaPredicted RBP12.62□□□□□ -0.39
LINC00339-202ENST00000416769 MX2P20592 715 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 PTGIRP43119 386 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 CCL11P51671 97 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 DYNLT1P63172 113 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 GPS2Q13227 327 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 XRCC4Q13426 336 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 IL11RAQ14626 422 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 GPR19Q15760 415 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.62□□□□□ -0.39
LINC00339-202ENST00000416769 CCDC181Q5TID7 509 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 ZNF787Q6DD87 383 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 TRAPPC5Q8IUR0 188 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 TRAM1L1Q8N609 369 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 FATE1Q969F0 183 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 HDAC11Q96DB2 347 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 CXorf40BQ96DE9 158 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 SLC41A2Q96JW4 573 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 AGAP3Q96P47 875 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 TIMM29Q9BSF4 260 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 MFRPQ9BY79 579 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 HOMER3Q9NSC5 361 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 POT1Q9NUX5 634 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 CDC23Q9UJX2 597 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 HEY1Q9Y5J3 304 aa12.62□□□□□ -0.39
LINC00339-202ENST00000416769 MDC1Q14676 2089 aaKnown RBP12.61□□□□□ -0.39
LINC00339-202ENST00000416769 CCDC88CQ9P219 2028 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 TCRBV7S2A1N4TA0A589 114 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 PGRMC1O00264 195 aaKnown RBP12.61□□□□□ -0.39
LINC00339-202ENST00000416769 KMOO15229 486 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 TOX3O15405 576 aaPredicted RBP12.61□□□□□ -0.39
LINC00339-202ENST00000416769 BUD23O43709 281 aaKnown RBP12.61□□□□□ -0.39
LINC00339-202ENST00000416769 UGT1A9O60656 530 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 VPS4BO75351 444 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 CDK14O94921 469 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 UGT1A6P19224 532 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 UGT1A1P22309 533 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 UGT1A4P22310 534 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 PBLDP30039 288 aaPredicted RBP12.61□□□□□ -0.39
LINC00339-202ENST00000416769 DCDC1P59894 354 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 IFI35P80217 286 aaPredicted RBP12.61□□□□□ -0.39
LINC00339-202ENST00000416769 OTUD4Q01804 1114 aaKnown RBP12.61□□□□□ -0.39
LINC00339-202ENST00000416769 PPIDQ08752 370 aaKnown RBP12.61□□□□□ -0.39
LINC00339-202ENST00000416769 NFE2L1Q14494 772 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 PDK1Q15118 436 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 SIX1Q15475 284 aaPredicted RBP12.61□□□□□ -0.39
LINC00339-202ENST00000416769 CCNG2Q16589 344 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 EIF2S3LQ2VIR3 472 aaKnown RBP12.61□□□□□ -0.39
LINC00339-202ENST00000416769 FHL5Q5TD97 284 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 APLFQ8IW19 511 aaPredicted RBP12.61□□□□□ -0.39
LINC00339-202ENST00000416769 TMEM151BQ8IW70 566 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 RASGEF1AQ8N9B8 481 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 Q8NA96 180 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 ACTL9Q8TC94 416 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 IMP4Q96G21 291 aaKnown RBP12.61□□□□□ -0.39
LINC00339-202ENST00000416769 OLFM3Q96PB7 478 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 ZSCAN5AQ9BUG6 496 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 GPR63Q9BZJ6 419 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 UGT1A7Q9HAW7 530 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 UGT1A10Q9HAW8 530 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 UGT1A8Q9HAW9 530 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 RARRES3Q9UL19 164 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 VPS4AQ9UN37 437 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 MAP4K5Q9Y4K4 846 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 PIKFYVEQ9Y2I7 2098 aa12.61□□□□□ -0.39
LINC00339-202ENST00000416769 RGSL1A5PLK6 1076 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 HACD1B0YJ81 288 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 TCP11X1B4DZS4 312 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 MASP2O00187 686 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms