RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 CGREF1Q99674 301 aa9.72□□□□□ -0.85
SS18-203ENST00000415083 BTBD2Q9BX70 525 aa9.72□□□□□ -0.85
SS18-203ENST00000415083 FBXO44Q9H4M3 255 aa9.72□□□□□ -0.85
SS18-203ENST00000415083 INIPQ9NRY2 104 aa9.72□□□□□ -0.85
SS18-203ENST00000415083 TMEFF2Q9UIK5 374 aaPredicted RBP9.72□□□□□ -0.85
SS18-203ENST00000415083 FNDC3AQ9Y2H6 1198 aaKnown RBP9.72□□□□□ -0.85
SS18-203ENST00000415083 SH3BP1Q9Y3L3 701 aa9.72□□□□□ -0.85
SS18-203ENST00000415083 POLR3HQ9Y535 204 aaPredicted RBP9.72□□□□□ -0.85
SS18-203ENST00000415083 OBSL1O75147 1896 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 SNX2O60749 519 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 LDLRP01130 860 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 PFKLP17858 780 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 FUT4P22083 530 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 CCND3P30281 292 aaPredicted RBP9.71□□□□□ -0.85
SS18-203ENST00000415083 OR1G1P47890 313 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 ALDH3A2P51648 485 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 SLC14A1Q13336 389 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 MEP1AQ16819 746 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 RTP2Q5QGT7 225 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 CCNYL2Q5T2Q4 361 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 ZNF773Q6PK81 442 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 AFTPHQ6ULP2 937 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 LINGO4Q6UY18 593 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 RAB44Q7Z6P3 723 aaPredicted RBP9.71□□□□□ -0.85
SS18-203ENST00000415083 SPARTQ8N0X7 666 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 OR10Q1Q8NGQ4 319 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 FRS2Q8WU20 508 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 TRIM15Q9C019 465 aa9.71□□□□□ -0.85
SS18-203ENST00000415083 H0YAE9 185 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 KDELR3O43731 214 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 VPS4BO75351 444 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 KATNA1O75449 491 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 UMPSP11172 480 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 PRKACGP22612 351 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 NR4A1P22736 598 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 ACVR2AP27037 513 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 PTPN6P29350 595 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 PLA2G16P53816 162 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 NUP107P57740 925 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 RING1Q06587 406 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 DAG1Q14118 895 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 RPS6KA2Q15349 733 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 PHACTR4Q8IZ21 702 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 LPCAT1Q8NF37 534 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 PJA1Q8NG27 643 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 GLT1D1Q96MS3 346 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 RHNO1Q9BSD3 238 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 NSUN3Q9H649 340 aaKnown RBP9.71□□□□□ -0.86
SS18-203ENST00000415083 SYTL2Q9HCH5 934 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 FAM118AQ9NWS6 357 aa9.71□□□□□ -0.86
SS18-203ENST00000415083 MBD1Q9UIS9 605 aaPredicted RBP9.71□□□□□ -0.86
SS18-203ENST00000415083 KANSL1LA0AUZ9 987 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 TLR5O60602 858 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 SNAP91O60641 907 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 XYLBO75191 536 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 HTR1BP28222 390 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 GP2P55259 537 aaKnown RBP9.7□□□□□ -0.86
SS18-203ENST00000415083 NAA20P61599 178 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 FAM189BP81408 668 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 PHKG1Q16816 387 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 MBOAT1Q6ZNC8 495 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 DCDC5Q6ZRR9 648 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 PIWIL3Q7Z3Z3 882 aaKnown RBP9.7□□□□□ -0.86
SS18-203ENST00000415083 GPSM1Q86YR5 675 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 RASAL3Q86YV0 1011 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 ZIC5Q96T25 663 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 MUC13Q9H3R2 512 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 GKN1Q9NS71 199 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 PCDHB5Q9Y5E4 795 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 ANKRD66B4E2M5 251 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 FZD6O60353 706 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 SULT1C4O75897 302 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 CD9P21926 228 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 ARPP19P56211 112 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 ZXDBP98169 803 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 IFITM3Q01628 133 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 PCBP2Q15366 365 aaKnown RBP eCLIP9.7□□□□□ -0.869e-6■□□□□ 8.7
SS18-203ENST00000415083 SULT1C3Q6IMI6 304 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 IL27RAQ6UWB1 636 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 BPIFB6Q8NFQ5 453 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 GIPC3Q8TF64 312 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 PLEKHA8Q96JA3 519 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 OSBPL10Q9BXB5 764 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 SERHLQ9NQF3 203 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 LHX3Q9UBR4 397 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 RAI2Q9Y5P3 530 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 SCAMP3O14828 347 aaKnown RBP9.7□□□□□ -0.86
SS18-203ENST00000415083 NDUFS3O75489 264 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 HOXB8P17481 243 aaPredicted RBP9.7□□□□□ -0.86
SS18-203ENST00000415083 IDUAP35475 653 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 MTHFRP42898 656 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 HMGCS1Q01581 520 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 DUSP4Q13115 394 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 PWP1Q13610 501 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 TAF1CQ15572 869 aaPredicted RBP9.7□□□□□ -0.86
SS18-203ENST00000415083 PROSER1Q86XN7 944 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 OR56A4Q8NGH8 313 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 WFDC5Q8TCV5 224 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 RMDN1Q96DB5 314 aa9.7□□□□□ -0.86
SS18-203ENST00000415083 CCDC115Q96NT0 180 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms