RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 OTUD4Q01804 1114 aaKnown RBP9.18□□□□□ -0.94
NEDD9-203ENST00000397378 NIPAL4Q0D2K0 466 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 BECN1Q14457 450 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 IFI16Q16666 785 aaKnown RBP9.18□□□□□ -0.94
NEDD9-203ENST00000397378 PLA2G4EQ3MJ16 856 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 DCAF10Q5QP82 559 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 LCN10Q6JVE6 187 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 CERS6Q6ZMG9 384 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 Q71RC1 249 aaPredicted RBP9.18□□□□□ -0.94
NEDD9-203ENST00000397378 C11orf96Q7Z7L8 435 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 TTC30BQ8N4P2 665 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.18□□□□□ -0.94
NEDD9-203ENST00000397378 GPR26Q8NDV2 337 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 SPATA3Q8NHX4 192 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 HSPH1Q92598 858 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 MTFMTQ96DP5 389 aaKnown RBP9.18□□□□□ -0.94
NEDD9-203ENST00000397378 CNDP1Q96KN2 507 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 ERGIC2Q96RQ1 377 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 NUP85Q9BW27 656 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 ADGRE3Q9BY15 652 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 ZFYVE1Q9HBF4 777 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 RAD18Q9NS91 495 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 RBM22Q9NW64 420 aaKnown RBP eCLIP9.18□□□□□ -0.94
NEDD9-203ENST00000397378 WDR37Q9Y2I8 494 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 SCINQ9Y6U3 715 aa9.18□□□□□ -0.94
NEDD9-203ENST00000397378 UBA6A0AVT1 1052 aaPredicted RBP9.17□□□□□ -0.94
NEDD9-203ENST00000397378 OR5K3A6NET4 321 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 KIAA1324LA8MWY0 1029 aaPredicted RBP9.17□□□□□ -0.94
NEDD9-203ENST00000397378 MFSD11O43934 449 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 CDK14O94921 469 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 FTLP02792 175 aaPredicted RBP9.17□□□□□ -0.94
NEDD9-203ENST00000397378 HLA-DQB2P05538 268 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 MMP2P08253 660 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 TCF4P15884 667 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 RORAP35398 523 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 KIR3DL1P43629 444 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 DMPKQ09013 629 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 ZNF169Q14929 603 aaPredicted RBP9.17□□□□□ -0.94
NEDD9-203ENST00000397378 PAFAH1B3Q15102 231 aaKnown RBP9.17□□□□□ -0.94
NEDD9-203ENST00000397378 GPR19Q15760 415 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 SKOR2Q2VWA4 1001 aaPredicted RBP9.17□□□□□ -0.94
NEDD9-203ENST00000397378 KHDC1Q4VXA5 237 aaKnown RBP9.17□□□□□ -0.94
NEDD9-203ENST00000397378 DNTTIP2Q5QJE6 756 aaKnown RBP9.17□□□□□ -0.94
NEDD9-203ENST00000397378 ALS2CLQ60I27 953 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 FCRL6Q6DN72 434 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 TXNRD3NBQ6F5E7 133 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 GFRALQ6UXV0 394 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 CXXC5Q7LFL8 322 aaKnown RBP9.17□□□□□ -0.94
NEDD9-203ENST00000397378 TMC3Q7Z5M5 1100 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 BCORP1Q8N888 145 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 LRRN4CLQ8ND94 238 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 GPR150Q8NGU9 434 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 DNAJB14Q8TBM8 379 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 FAM71BQ8TC56 605 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 PPP4R1Q8TF05 950 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 CPT1BQ92523 772 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 IP6K3Q96PC2 410 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 VPS35Q96QK1 796 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 XPO4Q9C0E2 1151 aaKnown RBP9.17□□□□□ -0.94
NEDD9-203ENST00000397378 MAGEE1Q9HCI5 957 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 MRPL47Q9HD33 250 aaKnown RBP9.17□□□□□ -0.94
NEDD9-203ENST00000397378 MYO6Q9UM54 1294 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 BTRCQ9Y297 605 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 TTLL3Q9Y4R7 772 aa9.17□□□□□ -0.94
NEDD9-203ENST00000397378 SNRNP200O75643 2136 aaKnown RBP9.16□□□□□ -0.94
NEDD9-203ENST00000397378 PEX12O00623 359 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 MTX2O75431 263 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 MSL3P1P0C860 447 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 MYBL1P10243 752 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 IST1P53990 364 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 SLC25A11Q02978 314 aaKnown RBP9.16□□□□□ -0.94
NEDD9-203ENST00000397378 UBXN1Q04323 297 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 TMEM115Q12893 351 aaPredicted RBP9.16□□□□□ -0.94
NEDD9-203ENST00000397378 FOXD4Q12950 439 aaPredicted RBP9.16□□□□□ -0.94
NEDD9-203ENST00000397378 ABRQ12979 859 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 PIGHQ14442 188 aaPredicted RBP9.16□□□□□ -0.94
NEDD9-203ENST00000397378 PLCL1Q15111 1095 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 RPE65Q16518 533 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 CCDC122Q5T0U0 273 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 TMTC4Q5T4D3 741 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 NCBP2-AS2Q69YL0 99 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 FAM198BQ6UWH4 519 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 TMEM207Q6UWW9 146 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 MRGPREQ86SM8 312 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 TRAPPC5Q8IUR0 188 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 SYTL1Q8IYJ3 562 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 NIPA2Q8N8Q9 360 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 BRSK1Q8TDC3 778 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 ZFPM2Q8WW38 1151 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 ZNF653Q96CK0 615 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 CLIP3Q96DZ5 547 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 TRIM11Q96F44 468 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 MAGEB10Q96LZ2 347 aaPredicted RBP9.16□□□□□ -0.94
NEDD9-203ENST00000397378 AGAP3Q96P47 875 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 GBP5Q96PP8 586 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 FANCEQ9HB96 536 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 SYTL2Q9HCH5 934 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 HRASLS2Q9NWW9 162 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 TRIM10Q9UDY6 481 aa9.16□□□□□ -0.94
NEDD9-203ENST00000397378 LIMA1Q9UHB6 759 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms