RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 C2orf78A6NCI8 922 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 CCDC154A6NI56 674 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 AQP12BA6NM10 295 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 C9JVG2 144 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 SYNCRIPO60506 623 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 PGM3O95394 542 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 CTPS1P17812 591 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 CAPN3P20807 821 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 ARF5P84085 180 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 FOXM1Q08050 763 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 ATP6AP1LQ52LC2 224 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 COQ5Q5HYK3 327 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 SIGIRRQ6IA17 410 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 ADAMTSL2Q86TH1 951 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 SYVN1Q86TM6 617 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 RETREG3Q86VR2 466 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 IFNEQ86WN2 208 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 AQP12AQ8IXF9 295 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 ELMOD1Q8N336 334 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 CDYL2Q8N8U2 506 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 DDI1Q8WTU0 396 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 PMEPA1Q969W9 287 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 MYO19Q96H55 970 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 MRPS26Q9BYN8 205 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 RNF38Q9H0F5 515 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 TUBB1Q9H4B7 451 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 GALPQ9UBC7 116 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 LEF1Q9UJU2 399 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 LSM7Q9UK45 103 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 PCTPQ9UKL6 214 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 LZTS1Q9Y250 596 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 FAM47E-STBD1D6RA91 191 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 RAD51BO15315 384 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 SLC22A3O75751 556 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 ITGALP20701 1170 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 AP1S1P61966 158 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 CAPRIN1Q14444 709 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 SPATS1Q496A3 300 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 TJAP1Q5JTD0 557 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 CXorf57Q6NSI4 855 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 BLOC1S3Q6QNY0 202 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 ISLR2Q6UXK2 745 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 SATL1Q86VE3 508 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 CLVS1Q8IUQ0 354 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 FNDC5Q8NAU1 212 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 FNDC8Q8TC99 324 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 METTL6Q8TCB7 284 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 CD200R1Q8TD46 325 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 LRRC58Q96CX6 371 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 MYRFLQ96LU7 910 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 NOL11Q9H8H0 719 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 CCDC177Q9NQR7 707 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 PCDH10Q9P2E7 1040 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 CNOT6Q9ULM6 557 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 DHRS12A0PJE2 317 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 NME4O00746 187 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 GUCY1B2O75343 617 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 TIPRLO75663 272 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 OR4F21O95013 312 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 LATS1O95835 1130 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 F11P03951 625 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 ENO2P09104 434 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-204ENST00000392003 PABPC4LP0CB38 370 aaKnown RBP9.5□□□□□ -0.89
COL6A3-204ENST00000392003 PSMA3P25788 255 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 HMOX2P30519 316 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 PPM1AP35813 382 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 ETV3P41162 512 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 GRIA2P42262 883 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 EIF2B2P49770 351 aaKnown RBP9.5□□□□□ -0.89
COL6A3-204ENST00000392003 DIO3P55073 304 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 ERVK-8P63133 956 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 BCL2L1Q07817 233 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 SF3B4Q15427 424 aaKnown RBP eCLIP9.5□□□□□ -0.89
COL6A3-204ENST00000392003 ADRM1Q16186 407 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 AASDHQ4L235 1098 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-204ENST00000392003 SETMARQ53H47 684 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-204ENST00000392003 CANT1Q8WVQ1 401 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 ESAMQ96AP7 390 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 DUS3LQ96G46 650 aaKnown RBP9.5□□□□□ -0.89
COL6A3-204ENST00000392003 SLC30A3Q99726 388 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 EGFL8Q99944 293 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 FEM1AQ9BSK4 669 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 C1QTNF3Q9BXJ4 246 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 TRIM54Q9BYV2 358 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 MUC13Q9H3R2 512 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 C11orf49Q9H6J7 331 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 AIG1Q9NVV5 245 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 MAP10Q9P2G4 905 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 EGFL7Q9UHF1 273 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 MED16Q9Y2X0 877 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 FCF1Q9Y324 198 aaKnown RBP9.5□□□□□ -0.89
COL6A3-204ENST00000392003 DHRS7Q9Y394 339 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-204ENST00000392003 A0A1W2PP18 115 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 H7C0S8 307 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 HSD17B1P14061 328 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 ATP6V1B1P15313 513 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 FASP25445 335 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 TGFBIQ15582 683 aa9.5□□□□□ -0.89
COL6A3-204ENST00000392003 CTSL3PQ5NE16 218 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms