RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 KRT38O76015 456 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 METTL18O95568 372 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 PRKCGP05129 697 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 APRTP07741 180 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 SNRPAP09012 282 aaKnown RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 NR2F6P10588 404 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 PIM1P11309 404 aaPredicted RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 CHRM3P20309 590 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 PCSK6P29122 969 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 TKTP29401 623 aaKnown RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 GLUD2P49448 558 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 SULT1E1P49888 294 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 MNAT1P51948 309 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 SLC8A3P57103 927 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 LILRA4P59901 499 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 SARNPP82979 210 aaKnown RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 CDK18Q07002 472 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 ADIGQ0VDE8 80 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 SLC10A2Q12908 348 aaPredicted RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 FOXD4Q12950 439 aaPredicted RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 GALEQ14376 348 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 PAFAH1B3Q15102 231 aaKnown RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 PDK1Q15118 436 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 SLC25A52Q3SY17 297 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 ZNF618Q5T7W0 954 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 WLSQ5T9L3 541 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 SFRP4Q6FHJ7 346 aaPredicted RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 ZNF449Q6P9G9 518 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 TIFABQ6ZNK6 161 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 MARK2Q7KZI7 788 aaKnown RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 NLRP9Q7RTR0 991 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 ZNF551Q7Z340 670 aaPredicted RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 AMIGO2Q86SJ2 522 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 TBC1D1Q86TI0 1168 aaPredicted RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 PRPF39Q86UA1 669 aaKnown RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 PIGZQ86VD9 579 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 PPP1R3BQ86XI6 285 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 RASAL3Q86YV0 1011 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 DEFB106AQ8N104 65 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 TMEM86AQ8N2M4 240 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 CCDC185Q8N715 623 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 GSDMBQ8TAX9 411 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 CCDC110Q8TBZ0 833 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 RNF139Q8WU17 664 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 TFB1MQ8WVM0 346 aaKnown RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 DNAJB3Q8WWF6 145 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 HTR3CQ8WXA8 447 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 ERP27Q96DN0 273 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 MVB12AQ96EY5 273 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 CFAP36Q96G28 342 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 SERAC1Q96JX3 654 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 PPP1R10Q96QC0 940 aaKnown RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 RAB3IPQ96QF0 476 aaPredicted RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 EBNA1BP2Q99848 306 aaKnown RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 FERMT1Q9BQL6 677 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 NAT9Q9BTE0 207 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 APOL6Q9BWW8 343 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 TSSK1BQ9BXA7 367 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 MYLK2Q9H1R3 596 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 NOD2Q9HC29 1040 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 ANLNQ9NQW6 1124 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 SERTAD4Q9NUC0 356 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 SLC38A7Q9NVC3 462 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 RRN3Q9NYV6 651 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 IGSF9Q9P2J2 1179 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 LNPEPQ9UIQ6 1025 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 STAP1Q9ULZ2 295 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 GTF2A1LQ9UNN4 478 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 RPL26L1Q9UNX3 145 aaKnown RBP4.83□□□□□ -1.64
USP48-202ENST00000374730 GINS2Q9Y248 185 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 HES2Q9Y543 173 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 PLXNA3P51805 1871 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 PCNTO95613 3336 aa4.83□□□□□ -1.64
USP48-202ENST00000374730 NUP205Q92621 2012 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 MYLKQ15746 1914 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 TRIM49D1C9J1S8 452 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 COPEO14579 308 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 DCLK1O15075 740 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 BIRC5O15392 142 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 AVILO75366 819 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 AHSGP02765 367 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 ATP5BP06576 529 aaKnown RBP4.82□□□□□ -1.64
USP48-202ENST00000374730 KRT16P08779 473 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 FAM200BP0CF97 657 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 CSH1P0DML2 217 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 CSH2P0DML3 217 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 GOT1P17174 413 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 PGAM1P18669 254 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 LMO2P25791 158 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 RGS2P41220 211 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 LHX1P48742 406 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 RASSF2P50749 326 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 CCT8P50990 548 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 GTF2A1P52655 376 aaPredicted RBP4.82□□□□□ -1.64
USP48-202ENST00000374730 ATXN1P54253 815 aaKnown RBP4.82□□□□□ -1.64
USP48-202ENST00000374730 LOXL3P58215 753 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 DAOAP59103 153 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 KCNJ2P63252 427 aa4.82□□□□□ -1.64
USP48-202ENST00000374730 NKX6-1P78426 367 aaPredicted RBP4.82□□□□□ -1.64
USP48-202ENST00000374730 MRPS5P82675 430 aaKnown RBP4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms