RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 OR6C74A6NCV1 312 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 NDST3O95803 873 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 CYP1A2P05177 515 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 CAPN1P07384 714 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 HBQ1P09105 142 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 HLA-DPA1P20036 260 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 AGXTP21549 392 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 GJC1P36383 396 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 KPNA2P52292 529 aaKnown RBP13.48□□□□□ -0.25
VPS29-201ENST00000360579 SLC10A2Q12908 348 aaPredicted RBP13.48□□□□□ -0.25
VPS29-201ENST00000360579 ABRQ12979 859 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 RAPSNQ13702 412 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 NFE2L1Q14494 772 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 MYBPC3Q14896 1274 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 PCSK7Q16549 785 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 ZFYVE27Q5T4F4 411 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 METRNLQ641Q3 311 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 LCN10Q6JVE6 187 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 TMEM220Q6QAJ8 160 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 PQLC3Q8N755 202 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 RASGEF1AQ8N9B8 481 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 BARD1Q99728 777 aaKnown RBP13.48□□□□□ -0.25
VPS29-201ENST00000360579 TLR10Q9BXR5 811 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 HSD3B7Q9H2F3 369 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 KIR3DX1Q9H7L2 352 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 BPIFA1Q9NP55 256 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 RTN4Q9NQC3 1192 aaKnown RBP13.48□□□□□ -0.25
VPS29-201ENST00000360579 CHMP5Q9NZZ3 219 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 SLC24A2Q9UI40 661 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 SERTAD3Q9UJW9 196 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 ACSL5Q9ULC5 683 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 ENTPD4Q9Y227 616 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 BZW2Q9Y6E2 419 aaKnown RBP13.48□□□□□ -0.25
VPS29-201ENST00000360579 COLEC10Q9Y6Z7 277 aa13.48□□□□□ -0.25
VPS29-201ENST00000360579 TMEM150CB9EJG8 249 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 PEX12O00623 359 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 CD63P08962 238 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 PYGMP11217 842 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 SKILP12757 684 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 CDH3P22223 829 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 NDUFS1P28331 727 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 SPAM1P38567 509 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 PREPP48147 710 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 CTSCP53634 463 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 AP1B1Q10567 949 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 ITGA9Q13797 1035 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 PPP2R5EQ16537 467 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 LONRF2Q1L5Z9 754 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 FILIP1LQ4L180 1135 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 ATP13A4Q4VNC1 1196 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 PRAMEF17Q5VTA0 474 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 FAM69BQ5VUD6 431 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 FAM83HQ6ZRV2 1179 aaPredicted RBP13.47□□□□□ -0.25
VPS29-201ENST00000360579 MRGPREQ86SM8 312 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 GALNT16Q8N428 558 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 ZADH2Q8N4Q0 377 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 ST6GALNAC3Q8NDV1 305 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 DDHD1Q8NEL9 900 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 UBE2Q2Q8WVN8 375 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 TADA1Q96BN2 335 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 C12orf66Q96MD2 445 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 AGAP3Q96P47 875 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 RANBP9Q96S59 729 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 RUBCNLQ9H714 662 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 IL26Q9NPH9 171 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 LCMT1Q9UIC8 334 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 POMT2Q9UKY4 750 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 SRPK3Q9UPE1 567 aa13.47□□□□□ -0.25
VPS29-201ENST00000360579 CFAP20Q9Y6A4 193 aaKnown RBP13.47□□□□□ -0.25
VPS29-201ENST00000360579 SLC9B1P1A6NJY1 282 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 OR2AG2A6NM03 316 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 E7EQ34 232 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 AURKAO14965 403 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 SLC35G4P0C7Q5 338 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 OTX2P32243 289 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 TNNT3P45378 269 aaPredicted RBP13.46□□□□□ -0.25
VPS29-201ENST00000360579 KRT33BQ14525 404 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 SSPNQ14714 243 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 PDK1Q15118 436 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 DCAF10Q5QP82 559 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 Q6ZS92 163 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 OR1L3Q8NH93 324 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 RNF157Q96PX1 679 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 INSM2Q96T92 566 aaPredicted RBP13.46□□□□□ -0.25
VPS29-201ENST00000360579 WWP1Q9H0M0 922 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 PCDHGA10Q9Y5H3 936 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 HEY1Q9Y5J3 304 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 SPO11Q9Y5K1 396 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 HEBP2Q9Y5Z4 205 aa13.46□□□□□ -0.25
VPS29-201ENST00000360579 POLEQ07864 2286 aa13.46□□□□□ -0.26
VPS29-201ENST00000360579 GLYATL1P3A0A0U1RQE8 302 aa13.45□□□□□ -0.26
VPS29-201ENST00000360579 MGAT4DA6NG13 374 aa13.45□□□□□ -0.26
VPS29-201ENST00000360579 F5H423 210 aaPredicted RBP13.45□□□□□ -0.26
VPS29-201ENST00000360579 PPP1R12AO14974 1030 aaPredicted RBP13.45□□□□□ -0.26
VPS29-201ENST00000360579 PROSCO94903 275 aa13.45□□□□□ -0.26
VPS29-201ENST00000360579 LCA5LO95447 670 aa13.45□□□□□ -0.26
VPS29-201ENST00000360579 MT-CYBP00156 380 aaPredicted RBP13.45□□□□□ -0.26
VPS29-201ENST00000360579 POLR2CP19387 275 aaPredicted RBP13.45□□□□□ -0.26
VPS29-201ENST00000360579 POU3F2P20265 443 aaPredicted RBP13.45□□□□□ -0.26
VPS29-201ENST00000360579 MSH3P20585 1137 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms