RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 RPL7AP62424 266 aaKnown RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 PCDH1Q08174 1060 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SEMA5AQ13591 1074 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 FIP1L1Q6UN15 594 aaKnown RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 ABHD15Q6UXT9 468 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 RBM23Q86U06 439 aaKnown RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 TMEM17Q86X19 198 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ZNF567Q8N184 647 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ATAD1Q8NBU5 361 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 TNFAIP8L1Q8WVP5 186 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 CENPNQ96H22 339 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 IL12RB2Q99665 862 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 CDH22Q9UJ99 828 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 TBC1D24Q9ULP9 559 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ZFP37Q9Y6Q3 630 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 SMIM28A0A1B0GU29 152 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ATP6AP2A0A1C7CYW4 349 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ILVBLA1L0T0 632 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 TMEM150CB9EJG8 249 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 B4GALT5O43286 388 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PI15O43692 258 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 MFSD11O43934 449 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 HCN1O60741 890 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ATP6AP2O75787 350 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SNAPC5O75971 98 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 EOMESO95936 686 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PAX7P23759 505 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 NSG1P42857 185 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SLC5A9Q2M3M2 681 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 UBXN11Q5T124 520 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PDSS1Q5T2R2 415 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SPPL2CQ8IUH8 684 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 COX18Q8N8Q8 333 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 C12orf29Q8N999 325 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ZNF548Q8NEK5 533 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 OR2L3Q8NG85 312 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 RFT1Q96AA3 541 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ART5Q96L15 291 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 NIFKQ9BYG3 293 aaKnown RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 ALG2Q9H553 416 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 TCF7L1Q9HCS4 588 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 EURLQ9NYK6 297 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 MOCS1Q9NZB8 636 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PCDHGB2Q9Y5G2 931 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 GABRDO14764 452 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 TM7SF2O76062 418 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 ZBTB48P10074 688 aaPredicted RBP6.38□□□□□ -1.39
UPF2-201ENST00000356352 ZNF20P17024 532 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 MMP8P22894 467 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 ACVR2AP27037 513 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 CRISP3P54108 245 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 CASP9P55211 416 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 TLR1Q15399 786 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.38□□□□□ -1.393e-11■■■□□ 18.3
UPF2-201ENST00000356352 TSTD2Q5T7W7 516 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 IL23RQ5VWK5 629 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 POMZP3Q6PJE2 187 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 DNM1P34Q6PK57 102 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 ILDR1Q86SU0 546 aaPredicted RBP6.38□□□□□ -1.39
UPF2-201ENST00000356352 FAM129CQ86XR2 697 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 CFAP206Q8IYR0 622 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 CFAP52Q8N1V2 620 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 PNLDC1Q8NA58 520 aaKnown RBP6.38□□□□□ -1.39
UPF2-201ENST00000356352 SETD6Q8TBK2 473 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 CCDC107Q8WV48 283 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 PNPLA2Q96AD5 504 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 C8orf48Q96LL4 319 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 C12orf66Q96MD2 445 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 HNRNPABQ99729 332 aaKnown RBP6.38□□□□□ -1.39
UPF2-201ENST00000356352 ABCG8Q9H221 673 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 ERVK-11Q9UQG0 969 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 CFL2Q9Y281 166 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 ASB3Q9Y575 518 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 TLL2Q9Y6L7 1015 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 GRIN2DO15399 1336 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 PRR5-ARHGAP8B1AHC4 643 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 TSPAN9O75954 239 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 ANGPTL1O95841 491 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 CPN2P22792 545 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 DGKGP49619 791 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 CDH13P55290 713 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 RHBDL3P58872 404 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 ARHGAP8P85298 464 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 POU5F1Q01860 360 aaKnown RBP6.38□□□□□ -1.39
UPF2-201ENST00000356352 MINDY4Q4G0A6 757 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 ABCA11PQ4W5N1 156 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 USP43Q70EL4 1123 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 CMC1Q7Z7K0 106 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 SERPINA9Q86WD7 417 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 CRYBG2Q8N1P7 616 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 LIX1Q8N485 282 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 LINC00471Q8N535 108 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 OXR1Q8N573 874 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 TMEM145Q8NBT3 493 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 CLHC1Q8NHS4 586 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 SPOCK2Q92563 424 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 NR4A3Q92570 626 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 TMCO6Q96DC7 493 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 SLC39A3Q9BRY0 314 aa6.38□□□□□ -1.39
UPF2-201ENST00000356352 MRPS30Q9NP92 439 aaKnown RBP6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms