RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SIGLEC11Q96RL6 698 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 TMEM209Q96SK2 561 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 CDADC1Q9BWV3 514 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 FSD1LQ9BXM9 530 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 UGT2B28Q9BY64 529 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ULBP1Q9BZM6 244 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 GORASP2Q9H8Y8 452 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 CCDC177Q9NQR7 707 aaPredicted RBP6.7□□□□□ -1.34
VPS39-202ENST00000348544 ENTPD7Q9NQZ7 604 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 SNTG2Q9NY99 539 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 LIMD1Q9UGP4 676 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ADGRE2Q9UHX3 823 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 SNX6Q9UNH7 406 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 CLDN24A6NM45 220 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ERVH48-1M5A8F1 160 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 GNGT2O14610 69 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 AREL1O15033 823 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 NPPAP01160 153 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 DBTP11182 482 aaKnown RBP6.69□□□□□ -1.34
VPS39-202ENST00000348544 NPR3P17342 541 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ALOX12P18054 663 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 FDXRP22570 491 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 EPHA2P29317 976 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 GRK5P34947 590 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 GRIK1P39086 918 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ARL1P40616 181 aaPredicted RBP6.69□□□□□ -1.34
VPS39-202ENST00000348544 CXCR3P49682 368 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 GEMP55040 296 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 TRAF3Q13114 568 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 IL18R1Q13478 541 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 Q5BKY6 102 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 C6orf136Q5SQH8 315 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 DCAF15Q66K64 600 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ZCCHC8Q6NZY4 707 aaKnown RBP6.69□□□□□ -1.34
VPS39-202ENST00000348544 LYPD8Q6UX82 237 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 SULF1Q8IWU6 871 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 UBQLNLQ8IYU4 475 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 SLC38A6Q8IZM9 456 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 LINC01465Q8N7H1 131 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 B3GALNT2Q8NCR0 500 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ANKK1Q8NFD2 765 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 OR5K1Q8NHB7 308 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ELMO1Q92556 727 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 DMRTB1Q96MA1 342 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ZNF599Q96NL3 588 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 SDHCQ99643 169 aaPredicted RBP6.69□□□□□ -1.34
VPS39-202ENST00000348544 GDF15Q99988 308 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 TMEM246Q9BRR3 403 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 COLEC11Q9BWP8 271 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 PRKD2Q9BZL6 878 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 NXF2Q9GZY0 626 aaKnown RBP6.69□□□□□ -1.34
VPS39-202ENST00000348544 TKTL2Q9H0I9 626 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 RNF167Q9H6Y7 350 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 RGS18Q9NS28 235 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 TMEM30AQ9NV96 361 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ZIM2Q9NZV7 527 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 VAPAQ9P0L0 249 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 PKP3Q9Y446 797 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 KCTD3Q9Y597 815 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 DOCK1Q14185 1865 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 C19orf67A6NJJ6 358 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 SOCS7O14512 581 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 HBP1O60381 514 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ICMTO60725 284 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 KATNA1O75449 491 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 SEMA3DO95025 777 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 PGLSO95336 258 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 PARNO95453 639 aaKnown RBP6.69□□□□□ -1.34
VPS39-202ENST00000348544 TGFB3P10600 412 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ZNF37AP17032 561 aaPredicted RBP6.69□□□□□ -1.34
VPS39-202ENST00000348544 GADD45AP24522 165 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 CCNCP24863 283 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 KRT20P35900 424 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 AGTR2P50052 363 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 SCNN1GP51170 649 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 P2RX3P56373 397 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 WNT3AP56704 352 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 OR2B6P58173 313 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 DAOAP59103 153 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 GNG2P59768 71 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ERVK-8P63133 956 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 PRKCDQ05655 676 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 PRKG2Q13237 762 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 IHHQ14623 411 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 KYAT1Q16773 422 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ATP6AP1LQ52LC2 224 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 SOWAHCQ53LP3 525 aaPredicted RBP6.69□□□□□ -1.34
VPS39-202ENST00000348544 ZC3H12BQ5HYM0 836 aaKnown RBP6.69□□□□□ -1.34
VPS39-202ENST00000348544 CEP78Q5JTW2 689 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 PM20D1Q6GTS8 502 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 KDELC1Q6UW63 502 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 RAB44Q7Z6P3 723 aaPredicted RBP6.69□□□□□ -1.34
VPS39-202ENST00000348544 SIX5Q8N196 739 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 ATPAF2Q8N5M1 289 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 DCBLD1Q8N8Z6 715 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 OR2T12Q8NG77 320 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 OR10Q1Q8NGQ4 319 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 KCTD13Q8WZ19 329 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 EDEM1Q92611 657 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 UBE2FQ969M7 185 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms