RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 GRIK2Q13002 908 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 TRAF3Q13114 568 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 MBOAT1Q6ZNC8 495 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 FIBCD1Q8N539 461 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 ACDQ96AP0 544 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 ACTL8Q9H568 366 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 PFDN4Q9NQP4 134 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 LSM7Q9UK45 103 aaKnown RBP19.05■□□□□ 0.64
COL9A3-201ENST00000343916 TNPO3Q9Y5L0 923 aaKnown RBP19.05■□□□□ 0.64
COL9A3-201ENST00000343916 V9GYQ6 96 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 MYOFQ9NZM1 2061 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 LSM1O15116 133 aaKnown RBP19.05■□□□□ 0.64
COL9A3-201ENST00000343916 RSL1D1O76021 490 aaKnown RBP19.05■□□□□ 0.64
COL9A3-201ENST00000343916 BMP2P12643 396 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 INPP5AQ14642 412 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 AP5B1Q2VPB7 878 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 PLEKHG6Q3KR16 790 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 NADK2Q4G0N4 442 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 EPHX4Q8IUS5 362 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 FAM217AQ8IXS0 508 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 ADGRG5Q8IZF4 528 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 ANKFN1Q8N957 763 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 PDPRQ8NCN5 879 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 OSBPL11Q9BXB4 747 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 TRIM15Q9C019 465 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 DUS2Q9NX74 493 aaKnown RBP19.05■□□□□ 0.64
COL9A3-201ENST00000343916 SPG21Q9NZD8 308 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 ZIM2Q9NZV7 527 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 PTBP2Q9UKA9 531 aaKnown RBP19.05■□□□□ 0.64
COL9A3-201ENST00000343916 SH3BP1Q9Y3L3 701 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 POLR3HQ9Y535 204 aaPredicted RBP19.05■□□□□ 0.64
COL9A3-201ENST00000343916 SMIM31A0A1B0GVY4 71 aa19.04■□□□□ 0.64
COL9A3-201ENST00000343916 FAM234BA2RU67 622 aa19.04■□□□□ 0.64
COL9A3-201ENST00000343916 MT-ND1P03886 318 aa19.04■□□□□ 0.64
COL9A3-201ENST00000343916 RPS3P23396 243 aaKnown RBP eCLIP19.04■□□□□ 0.649e-9■■□□□ 13.1
COL9A3-201ENST00000343916 RPL5P46777 297 aaKnown RBP19.04■□□□□ 0.64
COL9A3-201ENST00000343916 MRPL19P49406 292 aaKnown RBP19.04■□□□□ 0.64
COL9A3-201ENST00000343916 RGS4P49798 205 aa19.04■□□□□ 0.64
COL9A3-201ENST00000343916 DGKQP52824 942 aa19.04■□□□□ 0.64
COL9A3-201ENST00000343916 PRKG2Q13237 762 aa19.04■□□□□ 0.64
COL9A3-201ENST00000343916 LRRC73Q5JTD7 316 aa19.04■□□□□ 0.64
COL9A3-201ENST00000343916 RBM44Q6ZP01 1051 aaKnown RBP19.04■□□□□ 0.64
COL9A3-201ENST00000343916 MILR1Q7Z6M3 343 aa19.04■□□□□ 0.64
COL9A3-201ENST00000343916 ZFAND4Q86XD8 727 aa19.04■□□□□ 0.64
COL9A3-201ENST00000343916 CMTR2Q8IYT2 770 aaKnown RBP19.04■□□□□ 0.64
COL9A3-201ENST00000343916 CBR4Q8N4T8 237 aa19.04■□□□□ 0.64
COL9A3-201ENST00000343916 GPR26Q8NDV2 337 aa19.04■□□□□ 0.64
COL9A3-201ENST00000343916 FARSBQ9NSD9 589 aaKnown RBP19.04■□□□□ 0.64
COL9A3-201ENST00000343916 A0A1W2PRU2 124 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 CCDC160A6NGH7 325 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 HMOX2P30519 316 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 LRRC23Q53EV4 343 aaPredicted RBP19.03■□□□□ 0.64
COL9A3-201ENST00000343916 CYP20A1Q6UW02 462 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 DDX53Q86TM3 631 aaKnown RBP19.03■□□□□ 0.64
COL9A3-201ENST00000343916 ITIH5Q86UX2 942 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 RALGPS2Q86X27 583 aaPredicted RBP19.03■□□□□ 0.64
COL9A3-201ENST00000343916 CMTM8Q8IZV2 173 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 ZBTB2Q8N680 514 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 MRPS31Q92665 395 aaKnown RBP19.03■□□□□ 0.64
COL9A3-201ENST00000343916 FAM126AQ9BYI3 521 aaPredicted RBP19.03■□□□□ 0.64
COL9A3-201ENST00000343916 ATP13A3Q9H7F0 1226 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 LATS2Q9NRM7 1088 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 AGPAT4Q9NRZ5 378 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 OGDHLQ9ULD0 1010 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.03■□□□□ 0.64
COL9A3-201ENST00000343916 H0YJX3 145 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 TGM5O43548 720 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 OTCP00480 354 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 IL10P22301 178 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 RFLNAQ6ZTI6 216 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 CARM1Q86X55 608 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 DRAXINQ8NBI3 349 aaPredicted RBP19.03■□□□□ 0.64
COL9A3-201ENST00000343916 VOPP1Q96AW1 172 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 PPM1MQ96MI6 270 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 SAGE1Q9NXZ1 904 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 ATP11BQ9Y2G3 1177 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 OARD1Q9Y530 152 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 SCN8AQ9UQD0 1980 aa19.03■□□□□ 0.64
COL9A3-201ENST00000343916 TRBV5-4A0A0C4DH59 114 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 HNRNPRO43390 633 aaKnown RBP19.02■□□□□ 0.64
COL9A3-201ENST00000343916 PARNO95453 639 aaKnown RBP19.02■□□□□ 0.64
COL9A3-201ENST00000343916 IGSF6O95976 241 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 DGKAP23743 735 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 TXNL4AP83876 142 aaKnown RBP19.02■□□□□ 0.64
COL9A3-201ENST00000343916 PLOD1Q02809 727 aaPredicted RBP19.02■□□□□ 0.64
COL9A3-201ENST00000343916 NHSL2Q5HYW2 709 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 GPRC6AQ5T6X5 926 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 PPP4R4Q6NUP7 873 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 OR2AP1Q8NGE2 309 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 CCT7Q99832 543 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 MRPS26Q9BYN8 205 aaKnown RBP19.02■□□□□ 0.64
COL9A3-201ENST00000343916 RC3H2Q9HBD1 1191 aaKnown RBP19.02■□□□□ 0.64
COL9A3-201ENST00000343916 ABCB8Q9NUT2 735 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 WWOXQ9NZC7 414 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 SPAM1P38567 509 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 RANBP1P43487 201 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 HMGCS1Q01581 520 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 SELPLGQ14242 412 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 PTGR1Q14914 329 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 DTNBP1Q96EV8 351 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms