RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 GDF3Q9NR23 364 aa17.43■□□□□ 0.38
SMAD4-201ENST00000342988 TEX51A0A1B0GUA7 166 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 COL6A1P12109 1028 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 PRDX5P30044 214 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 CDH8P55286 799 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 TMPRSS11BQ86T26 416 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 C12orf40Q86WS4 652 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 UNC5BQ8IZJ1 945 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 HJURPQ8NCD3 748 aaPredicted RBP17.42■□□□□ 0.38
SMAD4-201ENST00000342988 HEPHQ9BQS7 1158 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 POLR3HQ9Y535 204 aaPredicted RBP17.42■□□□□ 0.38
SMAD4-201ENST00000342988 TEX13DA0A0J9YY54 714 aaPredicted RBP17.42■□□□□ 0.38
SMAD4-201ENST00000342988 SULT1B1O43704 296 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 NRP2O60462 931 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 SSTR1P30872 391 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 CXCR3P49682 368 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 KCNT2Q6UVM3 1135 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 IRF2BPLQ9H1B7 796 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 TLL2Q9Y6L7 1015 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 SAMD9LQ8IVG5 1584 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 DAPL1A0PJW8 107 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 DCST2Q5T1A1 773 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 PTGR2Q8N8N7 351 aaPredicted RBP17.42■□□□□ 0.38
SMAD4-201ENST00000342988 SAMD9Q5K651 1589 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 AZIN1O14977 448 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 GPIP06744 558 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 RRAS2P62070 204 aaPredicted RBP17.42■□□□□ 0.38
SMAD4-201ENST00000342988 NKX6-1P78426 367 aaPredicted RBP17.42■□□□□ 0.38
SMAD4-201ENST00000342988 INAVAQ3KP66 663 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 FBXO33Q7Z6M2 555 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 FTMTQ8N4E7 242 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 TCTEX1D2Q8WW35 142 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 SH2D3AQ9BRG2 576 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 ERVK-5Q9HDB9 667 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 RAB9BQ9NP90 201 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 UNC13AQ9UPW8 1703 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 HCKP08631 526 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 CDK2P24941 298 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 TAS2R50P59544 299 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 TERB2Q8NHR7 220 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 MBOAT7Q96N66 472 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 TMEM100Q9NV29 134 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 PNPLA6Q8IY17 1366 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 MOXD2PA6NHM9 499 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 ZBTB11O95625 1053 aaPredicted RBP17.42■□□□□ 0.38
SMAD4-201ENST00000342988 ERCC1P07992 297 aaPredicted RBP17.42■□□□□ 0.38
SMAD4-201ENST00000342988 UBAP2LQ14157 1087 aaKnown RBP17.42■□□□□ 0.38
SMAD4-201ENST00000342988 HEPACAMQ14CZ8 416 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 SGCBQ16585 318 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 SP8Q8IXZ3 490 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 OR14A2Q96R54 314 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 RAD9AQ99638 391 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 KATNBL1Q9H079 304 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 U3KQV3 271 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 CMPK1P30085 196 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 NDNQ99608 321 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 GSKIPQ9P0R6 139 aa17.42■□□□□ 0.38
SMAD4-201ENST00000342988 PEX11AO75192 247 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 MAPTP10636 758 aaKnown RBP17.41■□□□□ 0.38
SMAD4-201ENST00000342988 GTF2F2P13984 249 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 MAGP20916 626 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 ARL14Q8N4G2 192 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 TBC1D15Q8TC07 691 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 LINGO1Q96FE5 620 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 KCNQ3O43525 872 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 AGR2O95994 175 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 USP17L7P0C7H9 530 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 USP4Q13107 963 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 IFNL1Q8IU54 200 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 COX18Q8N8Q8 333 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 C12orf65Q9H3J6 166 aaKnown RBP17.41■□□□□ 0.38
SMAD4-201ENST00000342988 A0A1B0GVM2 712 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 TCAF2A6NFQ2 919 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 NARSO43776 548 aaKnown RBP17.41■□□□□ 0.38
SMAD4-201ENST00000342988 AKAP3O75969 853 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 SLC35G6P0C7Q6 338 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 GARNL3Q5VVW2 1013 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 LIX1Q8N485 282 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 CAMK1GQ96NX5 476 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 ZNF490Q9ULM2 529 aaPredicted RBP17.41■□□□□ 0.38
SMAD4-201ENST00000342988 ASCC3Q8N3C0 2202 aaKnown RBP17.41■□□□□ 0.38
SMAD4-201ENST00000342988 C2orf72A6NCS6 295 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 MFSD11O43934 449 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 TFEBP19484 476 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 DMRTB1Q96MA1 342 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 LRTM1Q9HBL6 345 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 ATF5Q9Y2D1 282 aaPredicted RBP17.41■□□□□ 0.38
SMAD4-201ENST00000342988 PTPRTO14522 1441 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 A0A0J9YYE9 177 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 C17orf113A0A1B0GUU1 675 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 GSTM2P28161 218 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 C2orf80Q0P641 193 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 ABRAQ8N0Z2 381 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 CRYBG2Q8N1P7 616 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 VANGL1Q8TAA9 524 aaPredicted RBP17.41■□□□□ 0.38
SMAD4-201ENST00000342988 DPF1Q92782 380 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 KIAA0556O60303 1618 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 BCKDHAP12694 445 aa17.41■□□□□ 0.38
SMAD4-201ENST00000342988 PCBP1Q15365 356 aaKnown RBP eCLIP17.41■□□□□ 0.38
SMAD4-201ENST00000342988 LRIF1Q5T3J3 769 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms