RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SKIV2L2P42285 1042 aaKnown RBP21.74■■□□□ 1.07
SDC3-202ENST00000339394 PREPP48147 710 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 TAS2R39P59534 338 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 POU4F1Q01851 419 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 BMPR2Q13873 1038 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 SEPT7Q16181 437 aaKnown RBP21.74■■□□□ 1.07
SDC3-202ENST00000339394 SYTL3Q4VX76 610 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 LVRNQ6Q4G3 990 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 CD200R1Q8TD46 325 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 DPEP2Q9H4A9 486 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 CAB39LQ9H9S4 337 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 ACSL5Q9ULC5 683 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 DHRS7Q9Y394 339 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 FFAR2O15552 330 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 EML2O95834 649 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 APOA4P06727 396 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 ANXA6P08133 673 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 PDHA2P29803 388 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 SERPINB9P50453 376 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 PLOD1Q02809 727 aaPredicted RBP21.73■■□□□ 1.07
SDC3-202ENST00000339394 USP10Q14694 798 aaKnown RBP21.73■■□□□ 1.07
SDC3-202ENST00000339394 UGT3A1Q6NUS8 523 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 FBXO38Q6PIJ6 1188 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 CEP97Q8IW35 865 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 ZBTB2Q8N680 514 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 TMEM159Q96B96 161 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 KLHL42Q9P2K6 505 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 CDYLQ9Y232 598 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 PLAAQ9Y263 795 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 WDR37Q9Y2I8 494 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 PCDHGB2Q9Y5G2 931 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 NFS1Q9Y697 457 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 LRP4O75096 1905 aa21.73■■□□□ 1.07
SDC3-202ENST00000339394 TPP1O14773 563 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 TCEA3O75764 348 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 SLCO1A2P46721 670 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 IFFO1Q0D2I5 559 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 RPA4Q13156 261 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 SUZ12Q15022 739 aaKnown RBP21.72■■□□□ 1.07
SDC3-202ENST00000339394 PLEKHS1Q5SXH7 462 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 DBX2Q6ZNG2 339 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 VRK3Q8IV63 474 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 IQCKQ8N0W5 287 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 EPS8L3Q8TE67 593 aaKnown RBP21.72■■□□□ 1.07
SDC3-202ENST00000339394 INPP5DQ92835 1189 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 PPCSQ9HAB8 311 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 NLGN3Q9NZ94 848 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 PSMC3IPQ9P2W1 217 aaPredicted RBP21.72■■□□□ 1.07
SDC3-202ENST00000339394 TRMT6Q9UJA5 497 aaKnown RBP21.72■■□□□ 1.07
SDC3-202ENST00000339394 PCOLCE2Q9UKZ9 415 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 PSMD13Q9UNM6 376 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 ADAMTS9Q9P2N4 1935 aa21.72■■□□□ 1.07
SDC3-202ENST00000339394 A6NCN8 305 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 C4orf47A7E2U8 309 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 PDZK1P1A8MUH7 402 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 GFRA3O60609 400 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 KRT38O76015 456 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 SLCO2B1O94956 709 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 BRAFP15056 766 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 SLC12A2P55011 1212 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 SLC14A1Q13336 389 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 PDAP1Q13442 181 aaKnown RBP21.71■■□□□ 1.07
SDC3-202ENST00000339394 TMED2Q15363 201 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 PAQR3Q6TCH7 311 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 WASH2PQ6VEQ5 465 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 SFTPA2Q8IWL1 248 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 SPDYE1Q8NFV5 336 aaPredicted RBP21.71■■□□□ 1.07
SDC3-202ENST00000339394 OR52A5Q9H2C5 316 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 WASH6PQ9NQA3 447 aa21.71■■□□□ 1.07
SDC3-202ENST00000339394 RIF1Q5UIP0 2472 aaKnown RBP21.71■■□□□ 1.07
SDC3-202ENST00000339394 F3P13726 295 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 CNTFP26441 200 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 GBX1Q14549 363 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 ZNF460Q14592 562 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 CLCA4Q14CN2 919 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 UAP1L1Q3KQV9 507 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 TTLL9Q3SXZ7 439 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 ACSBG2Q5FVE4 666 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 LGSNQ5TDP6 509 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 AGAP9Q5VTM2 703 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 ABRAXAS1Q6UWZ7 409 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 TAOK1Q7L7X3 1001 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 TDRPQ86YL5 185 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 OR4C6Q8NH72 309 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 ZDHHC1Q8WTX9 485 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 DUSP23Q9BVJ7 150 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 SCHIP1Q9P0W5 487 aaPredicted RBP21.7■■□□□ 1.06
SDC3-202ENST00000339394 CTNNAL1Q9UBT7 734 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 TBK1Q9UHD2 729 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 CABIN1Q9Y6J0 2220 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 TMEM131Q92545 1883 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 ZNF292O60281 2723 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 SMIM23A6NLE4 172 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 TRIM38O00635 465 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 KRT37O76014 449 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 SNRPAP09012 282 aaKnown RBP21.7■■□□□ 1.06
SDC3-202ENST00000339394 STMN1P16949 149 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 ZKSCAN8Q15776 578 aaPredicted RBP21.7■■□□□ 1.06
SDC3-202ENST00000339394 C6orf132Q5T0Z8 1188 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 IYDQ6PHW0 289 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms