RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 MLYCDO95822 493 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 ELK4P28324 431 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 SUOXP51687 545 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 ERVK-8P63133 956 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 LSAMPQ13449 338 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 NHSL2Q5HYW2 709 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 NCEH1Q6PIU2 408 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 DTWD1Q8N5C7 304 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 PNPT1Q8TCS8 783 aaKnown RBP16.36■□□□□ 0.21
VPS54-201ENST00000272322 BBS2Q9BXC9 721 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 RIC8BQ9NVN3 520 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 PCDHA9Q9Y5H5 950 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 SMIM31A0A1B0GVY4 71 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 INPPL1O15357 1258 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 STT3AP46977 705 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 TPD52P55327 224 aaPredicted RBP16.36■□□□□ 0.21
VPS54-201ENST00000272322 MERTKQ12866 999 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 BFSP2Q13515 415 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 LAMB3Q13751 1172 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 RCAN2Q14206 197 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 PGS1Q32NB8 556 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 B3GNT6Q6ZMB0 384 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 SORCS1Q8WY21 1168 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 IGSF21Q96ID5 467 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 ZDHHC6Q9H6R6 413 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 ACTR8Q9H981 624 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 LEF1Q9UJU2 399 aaPredicted RBP16.36■□□□□ 0.21
VPS54-201ENST00000272322 ZNF490Q9ULM2 529 aaPredicted RBP16.36■□□□□ 0.21
VPS54-201ENST00000272322 A0A0C4DFX4 3053 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 UGT2B4P06133 528 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 NR1H2P55055 460 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 GPR107Q5VW38 600 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 SBSNQ6UWP8 590 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 ENPP6Q6UWR7 440 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 LRRC43Q8N309 656 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 TMEM199Q8N511 208 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 EGLN2Q96KS0 407 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 CAPNS2Q96L46 248 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 ARL15Q9NXU5 204 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 ACTR3BQ9P1U1 418 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 SPEGQ15772 3267 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 TBC1D4O60343 1298 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 ZNF7P17097 686 aaPredicted RBP16.35■□□□□ 0.21
VPS54-201ENST00000272322 BPIP17213 487 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 AKT1P31749 480 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 ELAVL2Q12926 359 aaKnown RBP16.35■□□□□ 0.21
VPS54-201ENST00000272322 LIX1Q8N485 282 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 SCAMP4Q969E2 229 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.35■□□□□ 0.214e-6■■■■■ 48.1
VPS54-201ENST00000272322 ASB2Q96Q27 587 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 NAA50Q9GZZ1 169 aaKnown RBP16.35■□□□□ 0.21
VPS54-201ENST00000272322 OPTCQ9UBM4 332 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 SARDHQ9UL12 918 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 TRIM17Q9Y577 477 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 DIRAS1O95057 198 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 ACRP10323 421 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 PTGER3P43115 390 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 APLFQ8IW19 511 aaPredicted RBP16.35■□□□□ 0.21
VPS54-201ENST00000272322 MINDY1Q8N5J2 469 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 TRPV3Q8NET8 790 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 KCNJ9Q92806 393 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 EBPLQ9BY08 206 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 ACTL8Q9H568 366 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 SLC6A13Q9NSD5 602 aa16.35■□□□□ 0.21
VPS54-201ENST00000272322 NPIPB15A6NHN6 443 aaPredicted RBP16.34■□□□□ 0.21
VPS54-201ENST00000272322 DLGAP1O14490 977 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 LDLRP01130 860 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 CHRM1P11229 460 aaPredicted RBP16.34■□□□□ 0.21
VPS54-201ENST00000272322 HRH2P25021 359 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 HSPA13P48723 471 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 DGKKQ5KSL6 1271 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 ITFG1Q8TB96 612 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 ABCB8Q9NUT2 735 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 ARIH1Q9Y4X5 557 aaPredicted RBP16.34■□□□□ 0.21
VPS54-201ENST00000272322 OR2AG2A6NM03 316 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 GMNNO75496 209 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 GLUD1P00367 558 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 MYCLP1P12525 358 aaPredicted RBP16.34■□□□□ 0.21
VPS54-201ENST00000272322 TCF3P15923 654 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 CDH2P19022 906 aaPredicted RBP16.34■□□□□ 0.21
VPS54-201ENST00000272322 GSSP48637 474 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 NFATC2Q13469 925 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 SERPINA13PQ6UXR4 307 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 CARM1Q86X55 608 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 GPR26Q8NDV2 337 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 KLF16Q9BXK1 252 aaPredicted RBP16.34■□□□□ 0.21
VPS54-201ENST00000272322 TRIM15Q9C019 465 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 MTRRQ9UBK8 725 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 ATP11BQ9Y2G3 1177 aa16.34■□□□□ 0.21
VPS54-201ENST00000272322 GLYATL1P3A0A0U1RQE8 302 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 H3BNH8 94 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 TAPBPO15533 448 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 ULK1O75385 1050 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 ESR1P03372 595 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 POLR2IP36954 125 aaKnown RBP16.33■□□□□ 0.21
VPS54-201ENST00000272322 GALK1P51570 392 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 CACNG1Q06432 222 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 TMED1Q13445 227 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 SLC8B1Q6J4K2 584 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 TFAP2CQ92754 450 aa16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms