RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 CXorf49A8MYA2 514 aaPredicted RBP12.49□□□□□ -0.41
SS18-202ENST00000269138 QSOX1O00391 747 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 DKK1O94907 266 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 C1QAP02745 245 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 ESR1P03372 595 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 FAM153BP0C7A2 387 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 PKMP14618 531 aaKnown RBP12.49□□□□□ -0.41
SS18-202ENST00000269138 GLB1P16278 677 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 LEPRP48357 1165 aaKnown RBP12.49□□□□□ -0.41
SS18-202ENST00000269138 ADARP55265 1226 aaKnown RBP12.49□□□□□ -0.41
SS18-202ENST00000269138 UBE2IP63279 158 aaKnown RBP12.49□□□□□ -0.41
SS18-202ENST00000269138 BOP1Q14137 746 aaKnown RBP12.49□□□□□ -0.41
SS18-202ENST00000269138 RPE65Q16518 533 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 KYNUQ16719 465 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 FAM153CQ494X1 144 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 DGLUCYQ7Z3D6 616 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 VRK3Q8IV63 474 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 GSPT2Q8IYD1 628 aaKnown RBP12.49□□□□□ -0.41
SS18-202ENST00000269138 OR52A5Q9H2C5 316 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 ANKZF1Q9H8Y5 726 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 SARS2Q9NP81 518 aaKnown RBP12.49□□□□□ -0.41
SS18-202ENST00000269138 NINJ2Q9NZG7 142 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 CPNE7Q9UBL6 633 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.49□□□□□ -0.41
SS18-202ENST00000269138 ACSL5Q9ULC5 683 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 VPS9D1Q9Y2B5 631 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 PCDHB1Q9Y5F3 818 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 V9GYY5 206 aaPredicted RBP12.49□□□□□ -0.41
SS18-202ENST00000269138 KIR2DS5A0A0G2JLQ3 304 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 A0A0G2JNG1 304 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 KLHL33A6NCF5 533 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 OR5K4A6NMS3 321 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 RHPN2P1A8MT19 583 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 KIR2DS3K7RE56 304 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 RFPL3O75679 317 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 GSTM1P09488 218 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 MYBL2P10244 700 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 AOAHP28039 575 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 GSTM4Q03013 218 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 KIR2DS5Q14953 304 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.48□□□□□ -0.41
SS18-202ENST00000269138 CAPRIN2Q6IMN6 1127 aaKnown RBP12.48□□□□□ -0.41
SS18-202ENST00000269138 DUS1LQ6P1R4 473 aaKnown RBP12.48□□□□□ -0.41
SS18-202ENST00000269138 DHRS13Q6UX07 377 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 SLC9B2Q86UD5 537 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 NAT6Q93015 286 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 NDNQ99608 321 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 SLC30A3Q99726 388 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 CCDC3Q9BQI4 270 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 EVA1BQ9NVM1 165 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 CDYLQ9Y232 598 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 APOBEC2Q9Y235 224 aaKnown RBP12.48□□□□□ -0.41
SS18-202ENST00000269138 MED16Q9Y2X0 877 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 PCDHGA1Q9Y5H4 931 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 ZFC3H1O60293 1989 aaKnown RBP12.48□□□□□ -0.41
SS18-202ENST00000269138 DCHS1Q96JQ0 3298 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 ASXL3Q9C0F0 2248 aa12.48□□□□□ -0.41
SS18-202ENST00000269138 FAM159BA6NKW6 160 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 F8W8V4 182 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 LIN7AO14910 233 aaPredicted RBP12.47□□□□□ -0.41
SS18-202ENST00000269138 B4GAT1O43505 415 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 NUDT21O43809 227 aaKnown RBP12.47□□□□□ -0.41
SS18-202ENST00000269138 GPC4O75487 556 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 GSTA2P09210 222 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 SLC35G4P0C7Q5 338 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 SLC2A4P14672 509 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 XRCC1P18887 633 aaPredicted RBP12.47□□□□□ -0.41
SS18-202ENST00000269138 CHRM3P20309 590 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 HALP42357 657 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 FASLGP48023 281 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 OR1D5P58170 312 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 CCL7P80098 99 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 TIAL1Q01085 375 aaKnown RBP eCLIP12.47□□□□□ -0.41
SS18-202ENST00000269138 HHEXQ03014 270 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 HSPA14Q0VDF9 509 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 BIRC2Q13490 618 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 SYTL3Q4VX76 610 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 RBM20Q5T481 1227 aaKnown RBP12.47□□□□□ -0.41
SS18-202ENST00000269138 KIAA0408Q6ZU52 694 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 ZNF438Q7Z4V0 828 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 RELL1Q8IUW5 271 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 PHC3Q8NDX5 983 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 ACVR1CQ8NER5 493 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 OR6C4Q8NGE1 309 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 FBF1Q8TES7 1133 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 CXorf40BQ96DE9 158 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 C12orf66Q96MD2 445 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 AARSD1Q9BTE6 412 aaKnown RBP12.47□□□□□ -0.41
SS18-202ENST00000269138 TSSK1BQ9BXA7 367 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 CDC42EP4Q9H3Q1 356 aaKnown RBP12.47□□□□□ -0.41
SS18-202ENST00000269138 IMP3Q9NV31 184 aaKnown RBP12.47□□□□□ -0.41
SS18-202ENST00000269138 ZFATQ9P243 1243 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 SPTBN2O15020 2390 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 PIKFYVEQ9Y2I7 2098 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 H3BMM5 538 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 OPA1O60313 960 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 TOP3BO95985 862 aaKnown RBP12.47□□□□□ -0.41
SS18-202ENST00000269138 VIPP01282 170 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 GP1BAP07359 652 aa12.47□□□□□ -0.41
SS18-202ENST00000269138 MTHFD1P11586 935 aaKnown RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms