RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 PAGE2BQ5JRK9 111 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 AFMIDQ63HM1 303 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 DET1Q7L5Y6 550 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 ZFAND4Q86XD8 727 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 KRTCAP2Q8N6L1 136 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 ABHD11Q8NFV4 315 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 OR6K2Q8NGY2 324 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 RAB2BQ8WUD1 216 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 ZBTB18Q99592 522 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 IKZF5Q9H5V7 419 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 SLC52A3Q9NQ40 469 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 PRDM8Q9NQV8 689 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 FAM118AQ9NWS6 357 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 SH3BP1Q9Y3L3 701 aa12.22□□□□□ -0.45
CHMP3-201ENST00000263856 ZNF701M0R085 212 aaPredicted RBP12.21□□□□□ -0.45
CHMP3-201ENST00000263856 AXIN1O15169 862 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 NDST3O95803 873 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 CRHBPP24387 322 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 HTR1BP28222 390 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 ZFP36L2P47974 494 aaKnown RBP12.21□□□□□ -0.45
CHMP3-201ENST00000263856 PURAQ00577 322 aaKnown RBP12.21□□□□□ -0.45
CHMP3-201ENST00000263856 IL10RBQ08334 325 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 TUSC3Q13454 348 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 CRY1Q16526 586 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 MAPKAPK3Q16644 382 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 CTU2Q2VPK5 515 aaKnown RBP12.21□□□□□ -0.45
CHMP3-201ENST00000263856 SPANXN4Q5MJ08 99 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 C9orf131Q5VYM1 1079 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 RBM23Q86U06 439 aaKnown RBP12.21□□□□□ -0.45
CHMP3-201ENST00000263856 LRRC49Q8IUZ0 686 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 CCDC97Q96F63 343 aaPredicted RBP12.21□□□□□ -0.45
CHMP3-201ENST00000263856 TSPAN18Q96SJ8 248 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 FEM1AQ9BSK4 669 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 EPS8L2Q9H6S3 715 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 SCUBE2Q9NQ36 999 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 VPS4AQ9UN37 437 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 MED16Q9Y2X0 877 aa12.21□□□□□ -0.45
CHMP3-201ENST00000263856 H0Y858 1186 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 ADAM23O75077 832 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 BCAS1O75363 584 aaPredicted RBP12.21□□□□□ -0.46
CHMP3-201ENST00000263856 LRATO95237 230 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 B3GALT4O96024 378 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 MYCLP1P12525 358 aaPredicted RBP12.21□□□□□ -0.46
CHMP3-201ENST00000263856 ZNF12P17014 697 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 PBX3P40426 434 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 VBP1P61758 197 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 SEMG2Q02383 582 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 SETMARQ53H47 684 aaPredicted RBP12.21□□□□□ -0.46
CHMP3-201ENST00000263856 XAF1Q6GPH4 301 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 ADCK1Q86TW2 530 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 SKA2Q8WVK7 121 aaPredicted RBP12.21□□□□□ -0.46
CHMP3-201ENST00000263856 BTN2A3PQ96KV6 586 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 DPY30Q9C005 99 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 AMBRA1Q9C0C7 1298 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 NSUN3Q9H649 340 aaKnown RBP12.21□□□□□ -0.46
CHMP3-201ENST00000263856 IPPKQ9H8X2 491 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 SPC25Q9HBM1 224 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 PRDM5Q9NQX1 630 aaPredicted RBP12.21□□□□□ -0.46
CHMP3-201ENST00000263856 TLR9Q9NR96 1032 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 ORC6Q9Y5N6 252 aa12.21□□□□□ -0.46
CHMP3-201ENST00000263856 TYW5A2RUC4 315 aaKnown RBP12.2□□□□□ -0.46
CHMP3-201ENST00000263856 TRIM64CA6NLI5 447 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 SEC22BO75396 215 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 ZNF865P0CJ78 1059 aaPredicted RBP12.2□□□□□ -0.46
CHMP3-201ENST00000263856 C6orf141Q5SZD1 244 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 TTC23Q5W5X9 447 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 PTRHD1Q6GMV3 140 aaKnown RBP12.2□□□□□ -0.46
CHMP3-201ENST00000263856 AFTPHQ6ULP2 937 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 PTRH1Q86Y79 214 aaKnown RBP12.2□□□□□ -0.46
CHMP3-201ENST00000263856 NKAPQ8N5F7 415 aaKnown RBP12.2□□□□□ -0.46
CHMP3-201ENST00000263856 BPIFB1Q8TDL5 484 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 ADAMTS16Q8TE57 1224 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 ABHD8Q96I13 439 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 RASSF1Q9NS23 344 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 ZNF229Q9UJW7 825 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 F5H5T6 163 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 E2F3O00716 465 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 B4GALT3O60512 393 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 NADKO95544 446 aaPredicted RBP12.2□□□□□ -0.46
CHMP3-201ENST00000263856 FADS2O95864 444 aaKnown RBP12.2□□□□□ -0.46
CHMP3-201ENST00000263856 OGNP20774 298 aaKnown RBP12.2□□□□□ -0.46
CHMP3-201ENST00000263856 EIF4EBP2Q13542 120 aaPredicted RBP12.2□□□□□ -0.46
CHMP3-201ENST00000263856 CLDN19Q8N6F1 224 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 OR7A2PQ8NGA2 310 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 GTF3C2Q8WUA4 911 aaPredicted RBP12.2□□□□□ -0.46
CHMP3-201ENST00000263856 HPS1Q92902 700 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 ULK4Q96C45 1275 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 MS4A4AQ96JQ5 239 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 NODALQ96S42 347 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 PARK7Q99497 189 aaKnown RBP12.2□□□□□ -0.46
CHMP3-201ENST00000263856 HERC2P3Q9BVR0 1158 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 UGT2B28Q9BY64 529 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 KLHL25Q9H0H3 589 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 BLOC1S6Q9UL45 172 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 PKP3Q9Y446 797 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 LAMA2P24043 3122 aaKnown RBP12.2□□□□□ -0.46
CHMP3-201ENST00000263856 HAS3O00219 553 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 BNIP3LO60238 219 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 SERPINA1P01009 418 aa12.2□□□□□ -0.46
CHMP3-201ENST00000263856 TGFBR1P36897 503 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms