RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 LHPPQ9H008 270 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 CRISPLD1Q9H336 500 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 ZFP14Q9HCL3 533 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 HCSTQ9UBK5 93 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 PCDHGA11Q9Y5H2 935 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 WASH4PA8MWX3 477 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 TOR1BO14657 336 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 EEDO75530 441 aaKnown RBP9.91□□□□□ -0.82
LIG3-201ENST00000262327 RPS17P08708 135 aaKnown RBP9.91□□□□□ -0.82
LIG3-201ENST00000262327 MC4RP32245 332 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 PIGAP37287 484 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 MTHFRP42898 656 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 ARSFP54793 590 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 IL10RBQ08334 325 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 NKG7Q16617 165 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 GTDC1Q4AE62 458 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 RFTN2Q52LD8 501 aaPredicted RBP9.91□□□□□ -0.82
LIG3-201ENST00000262327 Q6ZNX1 250 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 R3HCC1LQ7Z5L2 792 aaKnown RBP9.91□□□□□ -0.82
LIG3-201ENST00000262327 BTLAQ7Z6A9 289 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 PHACTR4Q8IZ21 702 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 OR10A6Q8NH74 314 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 ACDQ96AP0 544 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 MTFMTQ96DP5 389 aaKnown RBP9.91□□□□□ -0.82
LIG3-201ENST00000262327 PLEKHA8Q96JA3 519 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 ASB2Q96Q27 587 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 CSF3RQ99062 836 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 THUMPD3Q9BV44 507 aaKnown RBP9.91□□□□□ -0.82
LIG3-201ENST00000262327 DERL2Q9GZP9 239 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 CCDC90BQ9GZT6 254 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 IKZF5Q9H5V7 419 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 ELAC1Q9H777 363 aaKnown RBP9.91□□□□□ -0.82
LIG3-201ENST00000262327 SYTL2Q9HCH5 934 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 INTS10Q9NVR2 710 aaKnown RBP9.91□□□□□ -0.82
LIG3-201ENST00000262327 INVSQ9Y283 1065 aa9.91□□□□□ -0.82
LIG3-201ENST00000262327 FNDC1Q4ZHG4 1894 aaPredicted RBP9.9□□□□□ -0.82
LIG3-201ENST00000262327 LCHNA4D1U4 455 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 TRIM64CA6NLI5 447 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 E5RI56 91 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 K7EPI3 171 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 SNAP91O60641 907 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 UROSP10746 265 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 HLA-DPA1P20036 260 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 DCKP27707 260 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 LSM3P62310 102 aaKnown RBP9.9□□□□□ -0.82
LIG3-201ENST00000262327 ADARB1P78563 741 aaKnown RBP9.9□□□□□ -0.82
LIG3-201ENST00000262327 HMGCS1Q01581 520 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 IL1RL1Q01638 556 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 NFATC3Q12968 1075 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 ITGADQ13349 1161 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 CCNYL2Q5T2Q4 361 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 C16orf59Q7L2K0 433 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 RTN4RL1Q86UN2 441 aaPredicted RBP9.9□□□□□ -0.82
LIG3-201ENST00000262327 AURKBQ96GD4 344 aaPredicted RBP9.9□□□□□ -0.82
LIG3-201ENST00000262327 BTN2A3PQ96KV6 586 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 BDH2Q9BUT1 245 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 TDRD1Q9BXT4 1180 aaKnown RBP9.9□□□□□ -0.82
LIG3-201ENST00000262327 ABCG8Q9H221 673 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 TOR3AQ9H497 397 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 ACTL8Q9H568 366 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 FARSBQ9NSD9 589 aaKnown RBP9.9□□□□□ -0.82
LIG3-201ENST00000262327 TBC1D23Q9NUY8 699 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 VAPAQ9P0L0 249 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 LIMD1Q9UGP4 676 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 TRMT6Q9UJA5 497 aaKnown RBP9.9□□□□□ -0.82
LIG3-201ENST00000262327 PTBP2Q9UKA9 531 aaKnown RBP9.9□□□□□ -0.82
LIG3-201ENST00000262327 SCML2Q9UQR0 700 aa9.9□□□□□ -0.82
LIG3-201ENST00000262327 CBX4O00257 560 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 UPK1AO00322 258 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 GNGT2O14610 69 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 PRAMEF11O60813 436 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 PQBP1O60828 265 aaKnown RBP9.9□□□□□ -0.83
LIG3-201ENST00000262327 NOL3O60936 208 aaKnown RBP9.9□□□□□ -0.83
LIG3-201ENST00000262327 NDST3O95803 873 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 B3GALT4O96024 378 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 FSHRP23945 695 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 ALDH4A1P30038 563 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 SLC6A4P31645 630 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 HTR7P34969 479 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 SUOXP51687 545 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 ERVK-8P63133 956 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 CD300CQ08708 224 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 PRKG2Q13237 762 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 ABRAXAS2Q15018 415 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 CTSL3PQ5NE16 218 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 DHRS4L2Q6PKH6 230 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 DLEU7Q6UYE1 221 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 SLC7A5P1Q8MH63 180 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 SCML4Q8N228 414 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 OR56A4Q8NGH8 313 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 SLC22A17Q8WUG5 538 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 PCDHGA8Q9Y5G5 932 aa9.9□□□□□ -0.83
LIG3-201ENST00000262327 MKI67P46013 3256 aaKnown RBP9.9□□□□□ -0.83
LIG3-201ENST00000262327 A8MX80 341 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 NT5C1B-RDH14C9J2C7 533 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 E2F3O00716 465 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 NBNO60934 754 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 ADAM23O75077 832 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 PRAMEF12O95522 483 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 TSPAN12O95859 305 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms