RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 P2RY6Q15077 328 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 TBCEQ15813 527 aaPredicted RBP3.65□□□□□ -1.83
CD44-239ENST00000639002 PWWP2BQ6NUJ5 590 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 FAAP20Q6NZ36 180 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 CLEC17AQ6ZS10 378 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 ISCA2Q86U28 154 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 SMAP1Q8IYB5 467 aaPredicted RBP3.65□□□□□ -1.83
CD44-239ENST00000639002 ZNF611Q8N823 705 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 BMPERQ8N8U9 685 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 PPHLN1Q8NEY8 458 aaKnown RBP3.65□□□□□ -1.83
CD44-239ENST00000639002 ETNPPLQ8TBG4 499 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 SLC22A12Q96S37 553 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 UBXN6Q9BZV1 441 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 SLA2Q9H6Q3 261 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 JMJD4Q9H9V9 463 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 PLCXD1Q9NUJ7 323 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 IGLV9-49A0A0B4J1Y8 123 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 OR6C76A6NM76 312 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 E9PQ18 207 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 DCXO43602 365 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 TRMUO75648 421 aaKnown RBP3.64□□□□□ -1.83
CD44-239ENST00000639002 CLEC3BP05452 202 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 CEBPBP17676 345 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 GPR143P51810 404 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 SP3Q02447 781 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 MEP1AQ16819 746 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 GTDC1Q4AE62 458 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 FAM109BQ6ICB4 259 aaPredicted RBP3.64□□□□□ -1.83
CD44-239ENST00000639002 SPINK14Q6IE38 97 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 ZNF613Q6PF04 617 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 GALNT13Q8IUC8 556 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 FRMD1Q8N878 549 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 L3MBTL4Q8NA19 623 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 RBM4BQ9BQ04 359 aaKnown RBP3.64□□□□□ -1.83
CD44-239ENST00000639002 SETD4Q9NVD3 440 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 LIMA1Q9UHB6 759 aaKnown RBP3.64□□□□□ -1.83
CD44-239ENST00000639002 DBNLQ9UJU6 430 aaKnown RBP3.64□□□□□ -1.83
CD44-239ENST00000639002 EXOGQ9Y2C4 368 aaKnown RBP3.64□□□□□ -1.83
CD44-239ENST00000639002 RABGAP1Q9Y3P9 1069 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 COL5A2P05997 1499 aaPredicted RBP3.64□□□□□ -1.83
CD44-239ENST00000639002 RUSC2Q8N2Y8 1516 aa3.64□□□□□ -1.83
CD44-239ENST00000639002 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 AP2A2O94973 939 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 MOCS3O95396 460 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 RAF1P04049 648 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 HIST1H2ABP04908 130 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 EIF2S1P05198 315 aaKnown RBP3.63□□□□□ -1.83
CD44-239ENST00000639002 ACP2P11117 423 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 HIST1H2ADP20671 130 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 CCR9P51686 369 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 RPS3AP61247 264 aaKnown RBP3.63□□□□□ -1.83
CD44-239ENST00000639002 IRX6P78412 446 aaPredicted RBP3.63□□□□□ -1.83
CD44-239ENST00000639002 MED22Q15528 200 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 TSTQ16762 297 aaKnown RBP3.63□□□□□ -1.83
CD44-239ENST00000639002 CTU2Q2VPK5 515 aaKnown RBP3.63□□□□□ -1.83
CD44-239ENST00000639002 XKR6Q5GH73 641 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 LCE3EQ5T5B0 92 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 ALS2CLQ60I27 953 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 CFAP77Q6ZQR2 320 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 HIST3H2AQ7L7L0 130 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 SLC16A9Q7RTY1 509 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 GPALPP1Q8IXQ4 340 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 SPAG16Q8N0X2 631 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 IL17REQ8NFR9 667 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 MRGPRDQ8TDS7 321 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 GRHL3Q8TE85 626 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 FAM222BQ8WU58 562 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 RFFLQ8WZ73 363 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 TMEM143Q96AN5 459 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 GIMAP5Q96F15 307 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 C18orf12Q96KH6 178 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 OR2A14Q96R47 310 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 IWS1Q96ST2 819 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 MCRIP2Q9BUT9 160 aaKnown RBP3.63□□□□□ -1.83
CD44-239ENST00000639002 ECHDC1Q9NTX5 307 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 MIOSQ9NXC5 875 aa3.63□□□□□ -1.83
CD44-239ENST00000639002 A0A087WW49 117 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 IGHV4-61A0A0C4DH41 118 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 OGG1O15527 345 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 TMCC2O75069 709 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 AGR2O95994 175 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 IGHV4-59P01825 116 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 HMBSP08397 361 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 TYMPP19971 482 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 PIK3CAP42336 1068 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 CDH11P55287 796 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 SNX16P57768 344 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 KCNJ10P78508 379 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 TFAP4Q01664 338 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 EIF4A2Q14240 407 aaKnown RBP3.62□□□□□ -1.83
CD44-239ENST00000639002 ZRSR2Q15696 482 aaKnown RBP3.62□□□□□ -1.83
CD44-239ENST00000639002 SNAI3Q3KNW1 292 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 CYP4A22Q5TCH4 519 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 FASTKD5Q7L8L6 764 aaKnown RBP3.62□□□□□ -1.83
CD44-239ENST00000639002 HACE1Q8IYU2 909 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 ZNF614Q8N883 585 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 ZNF383Q8NA42 475 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 ARHGEF2Q92974 986 aaKnown RBP3.62□□□□□ -1.83
CD44-239ENST00000639002 ELMOD3Q96FG2 381 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 C1orf74Q96LT6 269 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms