RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 NYNRINQ9P2P1 1898 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 PXDNLA1KZ92 1463 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 MRC1P22897 1456 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 IGHV4OR15-8A0A075B7B6 117 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 FAM237AA0A1B0GTK4 181 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 FAM172BPA6NC97 362 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 MAGEA13PA6NCF6 341 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 EIF4E1BA6NMX2 242 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 P2RY10O00398 339 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 AP3D1O14617 1153 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 MID1O15344 667 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 SPINT2O43291 252 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 ZBTB43O43298 467 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 FGF17O60258 216 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 KLK8O60259 260 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 NDUFS3O75489 264 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 WDHD1O75717 1129 aaPredicted RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 SLC25A12O75746 678 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 RNASEH2AO75792 299 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 SEC14L2O76054 403 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 GAGE7O76087 117 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 MBD4O95243 580 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 KCNK5O95279 499 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 IPO7O95373 1038 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 MLYCDO95822 493 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 F9P00740 461 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 GAGE12FP0CL80 117 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 GAGE12GP0CL81 117 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 GAGE12IP0CL82 117 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 FGF5P12034 268 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 MYOD1P15172 320 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 TMEM11P17152 192 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 DDX5P17844 614 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 POLR2CP19387 275 aaPredicted RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 AGAP20933 346 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 TNFAIP3P21580 790 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 PAX3P23760 479 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 ALDH4A1P30038 563 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 CORO1AP31146 461 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 CDAP32320 146 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 PBX3P40426 434 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 PRCPP42785 496 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 MATR3P43243 847 aaKnown RBP eCLIP1.08□□□□□ -2.245e-9■■■■□ 20.1
SMARCB1-209ENST00000635578 GABRB2P47870 512 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 ZNF132P52740 706 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 F2RL1P55085 397 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 DSCR10P59022 87 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 RPS3AP61247 264 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 LMO4P61968 165 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 RPL7AP62424 266 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 CSNK2A1P68400 391 aaPredicted RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 OLR1P78380 273 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 COG7P83436 770 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 PLIN5Q00G26 463 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 LRMPQ12912 555 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 PTP4A2Q12974 167 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 GRIK2Q13002 908 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 GAGE1Q13065 139 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 GAGE4Q13068 117 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 ZBTB17Q13105 803 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 TBX2Q13207 712 aaPredicted RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 MAD2L1Q13257 205 aaPredicted RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 KRT33BQ14525 404 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 OASLQ15646 514 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 EFNB3Q15768 340 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 LPAL2Q16609 132 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 SYT16Q17RD7 645 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 ASPRV1Q53RT3 343 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 SGO1Q5FBB7 561 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 C6orf141Q5SZD1 244 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 INTS11Q5TA45 600 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 CCDC30Q5VVM6 783 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 TXNDC8Q6A555 127 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 ANKRD54Q6NXT1 300 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 FAM122CQ6P4D5 195 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 QSOX2Q6ZRP7 698 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 KCTD8Q6ZWB6 473 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 TUBA1AQ71U36 451 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 KMT5CQ86Y97 462 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 MAP7D3Q8IWC1 876 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 ZNF34Q8IZ26 560 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 RNF113BQ8IZP6 322 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 METTL27Q8N6F8 245 aaPredicted RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 TSPYL6Q8N831 410 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 ZNF441Q8N8Z8 693 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 KBTBD3Q8NAB2 608 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 ZNF114Q8NC26 417 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 TMEM116Q8NCL8 245 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 CSNK2A3Q8NEV1 391 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 BBS10Q8TAM1 723 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 GSDMBQ8TAX9 411 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 TAS1R2Q8TE23 839 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 UTP15Q8TED0 518 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 PPP4R1Q8TF05 950 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 DUSP19Q8WTR2 217 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 SLC20A1Q8WUM9 679 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 PSPC1Q8WXF1 523 aaKnown RBP1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 POMGNT1Q8WZA1 660 aa1.08□□□□□ -2.24
SMARCB1-209ENST00000635578 HDAC2Q92769 488 aaKnown RBP1.08□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms