RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 NUDT22Q9BRQ3 303 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 EPB41L1Q9H4G0 881 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 CATSPERZQ9NTU4 200 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 SAMD15Q9P1V8 674 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 FAM8A1Q9UBU6 413 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 ANAPC5Q9UJX4 755 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 PSMD13Q9UNM6 376 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 SDR42E2A6NKP2 422 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 F8W8V4 182 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 DUX1O43812 170 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 BRINP1O60477 761 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 SLC35G4P0C7Q5 338 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 DR1Q01658 176 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 SEMA3AQ14563 771 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 RPE65Q16518 533 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 C3orf38Q5JPI3 329 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 PHF19Q5T6S3 580 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 RNASEH2BQ5TBB1 312 aaKnown RBP16.51■□□□□ 0.23
TRIM28-215ENST00000601150 CASC4Q6P4E1 433 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 SYT10Q6XYQ8 523 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 TMEM26Q6ZUK4 368 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 TMPRSS9Q7Z410 1059 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 PCGF5Q86SE9 256 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 SLITRK4Q8IW52 837 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 RBM12BQ8IXT5 1001 aaKnown RBP16.51■□□□□ 0.23
TRIM28-215ENST00000601150 CFAP206Q8IYR0 622 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 LSMEM2Q8N112 164 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 MPP5Q8N3R9 675 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 WDR36Q8NI36 951 aaKnown RBP16.51■□□□□ 0.23
TRIM28-215ENST00000601150 SERPINB12Q96P63 405 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 ZMYND15Q9H091 742 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 WWP1Q9H0M0 922 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 SEMA6CQ9H3T2 930 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 SLC40A1Q9NP59 571 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 ZMIZ1Q9ULJ6 1067 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 SATB2Q9UPW6 733 aa16.51■□□□□ 0.23
TRIM28-215ENST00000601150 A0A1W2PNU3 283 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-215ENST00000601150 MAGEB16A2A368 324 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 DNALI1O14645 258 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-215ENST00000601150 CD3EAPO15446 510 aaKnown RBP16.5■□□□□ 0.23
TRIM28-215ENST00000601150 VAPBO95292 243 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 FTH1P02794 183 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 POLBP06746 335 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 CSF2RBP32927 897 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 MAPK9P45984 424 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 EIF3IQ13347 325 aaKnown RBP16.5■□□□□ 0.23
TRIM28-215ENST00000601150 ZNF449Q6P9G9 518 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 CES3Q6UWW8 571 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 XKR5Q6UX68 686 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 ZNF574Q6ZN55 896 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-215ENST00000601150 RAB11FIP2Q7L804 512 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 PROSER1Q86XN7 944 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 OR4D9Q8NGE8 314 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 MFSD3Q96ES6 412 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 TBC1D10AQ9BXI6 508 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 COG4Q9H9E3 785 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 MARCH4Q9P2E8 410 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-215ENST00000601150 PCDHGA8Q9Y5G5 932 aa16.5■□□□□ 0.23
TRIM28-215ENST00000601150 IGHV5-10-1A0A0J9YXX1 117 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 OR1I1O60431 355 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 DXOO77932 396 aaKnown RBP16.49■□□□□ 0.23
TRIM28-215ENST00000601150 OR56A5P0C7T3 313 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 MTHFD1P11586 935 aaKnown RBP16.49■□□□□ 0.23
TRIM28-215ENST00000601150 HOXB3P14651 431 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-215ENST00000601150 PAMP19021 973 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 MAGEA3P43357 314 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 TTPAP49638 278 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 LIMK2P53671 638 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 CFHR1Q03591 330 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 DHX34Q14147 1143 aaKnown RBP16.49■□□□□ 0.23
TRIM28-215ENST00000601150 GPR18Q14330 331 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 ZNF658BQ4V348 819 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-215ENST00000601150 IZUMO3Q5VZ72 239 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 KIAA0930Q6ICG6 404 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-215ENST00000601150 TMEM71Q6P5X7 295 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 WDR74Q6RFH5 385 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-215ENST00000601150 IGF2-ASQ6U949 168 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 HOOK3Q86VS8 718 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 JAMLQ86YT9 394 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 FBXO39Q8N4B4 442 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 LILRA3Q8N6C8 439 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-215ENST00000601150 TMEM159Q96B96 161 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 C12orf66Q96MD2 445 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 INSM2Q96T92 566 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-215ENST00000601150 IMP3Q9NV31 184 aaKnown RBP16.49■□□□□ 0.23
TRIM28-215ENST00000601150 PRSS21Q9Y6M0 314 aa16.49■□□□□ 0.23
TRIM28-215ENST00000601150 USP24Q9UPU5 2620 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 PRAMEF33A0A0G2JMD5 474 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 FAM237BA0A1B0GVD1 139 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 TTI1O43156 1089 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 ARNTP27540 789 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 RBMS1P29558 406 aaKnown RBP16.48■□□□□ 0.23
TRIM28-215ENST00000601150 MLLT3P42568 568 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-215ENST00000601150 RPA4Q13156 261 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 TRA2AQ13595 282 aaKnown RBP eCLIP16.48■□□□□ 0.23
TRIM28-215ENST00000601150 CAPRIN2Q6IMN6 1127 aaKnown RBP16.48■□□□□ 0.23
TRIM28-215ENST00000601150 MRNIPQ6NTE8 343 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 FOXR1Q6PIV2 292 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 LDB1Q86U70 411 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-215ENST00000601150 OTUD6BQ8N6M0 293 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms