RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 TCRBV7S3A2A0A539 114 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 CCDC162PA2VCL2 907 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 PDZK1P1A8MUH7 402 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 FANCGO15287 622 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 TLX3O43711 291 aaPredicted RBP15.87■□□□□ 0.13
LSM4-206ENST00000600289 NSG1P42857 185 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 CDKN1CP49918 316 aaPredicted RBP15.87■□□□□ 0.13
LSM4-206ENST00000600289 INHBCP55103 352 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 TRIP13Q15645 432 aaPredicted RBP15.87■□□□□ 0.13
LSM4-206ENST00000600289 DBN1Q16643 649 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 XKR5Q6UX68 686 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 CERS6Q6ZMG9 384 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 B3GNT8Q7Z7M8 397 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 PIANPQ8IYJ0 282 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 LSMEM2Q8N112 164 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 CPT1BQ92523 772 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 TMEM159Q96B96 161 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 ZNF778Q96MU6 729 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 RUNDC3BQ96NL0 473 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 SLC38A3Q99624 504 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 KIFC1Q9BW19 673 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 STRADBQ9C0K7 418 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 SYNDIG1Q9H7V2 258 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 POLR1BQ9H9Y6 1135 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 KCNK4Q9NYG8 393 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 SCHIP1Q9P0W5 487 aaPredicted RBP15.87■□□□□ 0.13
LSM4-206ENST00000600289 ZNF624Q9P2J8 865 aaPredicted RBP15.87■□□□□ 0.13
LSM4-206ENST00000600289 SLC2A6Q9UGQ3 507 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 ACSL5Q9ULC5 683 aa15.87■□□□□ 0.13
LSM4-206ENST00000600289 TEX51A0A1B0GUA7 166 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 QSOX1O00391 747 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 TMEM63AO94886 807 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 PRSS56P0CW18 603 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 ALDH4A1P30038 563 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 SLC19A1P41440 591 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 HALP42357 657 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 VPS41P49754 854 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 SESN2P58004 480 aaPredicted RBP15.86■□□□□ 0.13
LSM4-206ENST00000600289 KCNC4Q03721 635 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 TRA2AQ13595 282 aaKnown RBP eCLIP15.86■□□□□ 0.13
LSM4-206ENST00000600289 NFE2L1Q14494 772 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 MAP9Q49MG5 647 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 ZNF658BQ4V348 819 aaPredicted RBP15.86■□□□□ 0.13
LSM4-206ENST00000600289 FAM83HQ6ZRV2 1179 aaPredicted RBP15.86■□□□□ 0.13
LSM4-206ENST00000600289 DET1Q7L5Y6 550 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 PIM3Q86V86 326 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 BEND7Q8N7W2 519 aaPredicted RBP15.86■□□□□ 0.13
LSM4-206ENST00000600289 OR4L1Q8NH43 312 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 WDR36Q8NI36 951 aaKnown RBP15.86■□□□□ 0.13
LSM4-206ENST00000600289 HM13Q8TCT9 377 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 HDAC10Q969S8 669 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.86■□□□□ 0.13
LSM4-206ENST00000600289 CCDC97Q96F63 343 aaPredicted RBP15.86■□□□□ 0.13
LSM4-206ENST00000600289 DDX47Q9H0S4 455 aaKnown RBP15.86■□□□□ 0.13
LSM4-206ENST00000600289 VPS37BQ9H9H4 285 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 XAB2Q9HCS7 855 aaKnown RBP15.86■□□□□ 0.13
LSM4-206ENST00000600289 CHRAC1Q9NRG0 131 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 PDP2Q9P2J9 529 aa15.86■□□□□ 0.13
LSM4-206ENST00000600289 ATXN7L1Q9ULK2 861 aaPredicted RBP15.86■□□□□ 0.13
LSM4-206ENST00000600289 TRBV23OR9-2A0A075B6M9 112 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 A0A1W2PNU3 283 aaPredicted RBP15.85■□□□□ 0.13
LSM4-206ENST00000600289 CCDC78A2IDD5 438 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 CCDC188H7C350 402 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 DUX1O43812 170 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 BRINP1O60477 761 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 GOT2P00505 430 aaKnown RBP15.85■□□□□ 0.13
LSM4-206ENST00000600289 VIPP01282 170 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 RPL10P27635 214 aaKnown RBP15.85■□□□□ 0.13
LSM4-206ENST00000600289 CSF2RBP32927 897 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 MAGEA3P43357 314 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 LIMK2P53671 638 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 GABREP78334 506 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 PRAMEP78395 509 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 PTK6Q13882 451 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 AARS2Q5JTZ9 985 aaKnown RBP15.85■□□□□ 0.13
LSM4-206ENST00000600289 ANKRD22Q5VYY1 191 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 WDR74Q6RFH5 385 aaPredicted RBP15.85■□□□□ 0.13
LSM4-206ENST00000600289 TMEM26Q6ZUK4 368 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 SYDE1Q6ZW31 735 aaPredicted RBP15.85■□□□□ 0.13
LSM4-206ENST00000600289 TAS2R42Q7RTR8 314 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 TMPRSS9Q7Z410 1059 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 CAND1Q86VP6 1230 aaKnown RBP15.85■□□□□ 0.13
LSM4-206ENST00000600289 NAT8LQ8N9F0 302 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 OR4D9Q8NGE8 314 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 OR10G6Q8NH81 332 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 PRR11Q96HE9 360 aaPredicted RBP15.85■□□□□ 0.13
LSM4-206ENST00000600289 TTC1Q99614 292 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 SLC40A1Q9NP59 571 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 SYBUQ9NX95 663 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 SOX13Q9UN79 622 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 SATB2Q9UPW6 733 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 WDR37Q9Y2I8 494 aa15.85■□□□□ 0.13
LSM4-206ENST00000600289 OR51F1A6NGY5 319 aa15.84■□□□□ 0.13
LSM4-206ENST00000600289 HGSO14964 777 aaPredicted RBP15.84■□□□□ 0.13
LSM4-206ENST00000600289 MGAT1P26572 445 aa15.84■□□□□ 0.13
LSM4-206ENST00000600289 PTGIRP43119 386 aa15.84■□□□□ 0.13
LSM4-206ENST00000600289 DRG2P55039 364 aaKnown RBP15.84■□□□□ 0.13
LSM4-206ENST00000600289 ERVPABLB-1P60509 514 aa15.84■□□□□ 0.13
LSM4-206ENST00000600289 CLCA4Q14CN2 919 aa15.84■□□□□ 0.13
LSM4-206ENST00000600289 SEPT7Q16181 437 aaKnown RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms