RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	ARL10	Q8N8L6	244 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	DCAKD	Q8WVC6	231 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	SLC44A1	Q8WWI5	657 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	SCG3	Q8WXD2	468 aa	Known RBP	12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	SPOCK2	Q92563	424 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	CDKL2	Q92772	493 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	HDAC10	Q969S8	669 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	EID2B	Q96D98	161 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	SCRN2	Q96FV2	425 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	LIN37	Q96GY3	246 aa	Predicted RBP	12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	LYSMD1	Q96S90	227 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	AGAP2	Q99490	1192 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	DHRS4	Q9BTZ2	278 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	WRAP53	Q9BUR4	548 aa	Known RBP	12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	TRABD	Q9H4I3	376 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	SUDS3	Q9H7L9	328 aa	Predicted RBP	12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	SYNDIG1	Q9H7V2	258 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	PCDH12	Q9NPG4	1184 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	MBNL1	Q9NR56	388 aa	Known RBP	12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	NLE1	Q9NVX2	485 aa	Predicted RBP	12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	EURL	Q9NYK6	297 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	ZFAT	Q9P243	1243 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	FETUB	Q9UGM5	382 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	SLC24A2	Q9UI40	661 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	FKBPL	Q9UIM3	349 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	RIMKLB	Q9ULI2	386 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	PSAT1	Q9Y617	370 aa		12.53	□□□□□ -0.4
UPF1-208	ENST00000600012	PMS2P1	A4D2B8	440 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	FOXO6	A8MYZ6	492 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	NTN3	O00634	580 aa	Predicted RBP	12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	STX7	O15400	261 aa	Known RBP	12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	RGS16	O15492	202 aa	Predicted RBP	12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	CDH16	O75309	829 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	RASGRP1	O95267	797 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	INHBA	P08476	426 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	PRSS56	P0CW18	603 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	CYP2A6	P11509	494 aa	Predicted RBP	12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	C6	P13671	934 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	HTR1B	P28222	390 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	VIPR1	P32241	457 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	HK3	P52790	923 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	POLR2L	P62875	67 aa	Known RBP	12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	EIF3I	Q13347	325 aa	Known RBP	12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	NAB1	Q13506	487 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	THOC5	Q13769	683 aa	Known RBP	12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	LY6D	Q14210	128 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	LRRC14	Q15048	493 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	TMEM52B	Q4KMG9	183 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	TEDDM1	Q5T9Z0	273 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	LRRC66	Q68CR7	880 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	KCTD16	Q68DU8	428 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	ZNF449	Q6P9G9	518 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	CCDC81	Q6ZN84	652 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	CYS1	Q717R9	158 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	TDRP	Q86YL5	185 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	CYP4X1	Q8N118	509 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	RIBC1	Q8N443	379 aa	Predicted RBP	12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	OTUD6B	Q8N6M0	293 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	OR6P1	Q8NGX9	317 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	PEX13	Q92968	403 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	SEMA4C	Q9C0C4	833 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	ZFYVE1	Q9HBF4	777 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	IL17C	Q9P0M4	197 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	MARCH4	Q9P2E8	410 aa	Predicted RBP	12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	LGALS13	Q9UHV8	139 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	IKBKG	Q9Y6K9	419 aa		12.52	□□□□□ -0.41
UPF1-208	ENST00000600012	PIKFYVE	Q9Y2I7	2098 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012		B8ZZF3	427 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012		D6RAR5	112 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	TMX2-CTNND1	H3BSU7	103 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	PLD2	O14939	933 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	CELA2B	P08218	269 aa	Predicted RBP	12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	CTSE	P14091	401 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	PSMA3	P25788	255 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	MMP12	P39900	470 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	SLC1A2	P43004	574 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	MPP1	Q00013	466 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	PDE1B	Q01064	536 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	RALGDS	Q12967	914 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	GPS2	Q13227	327 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	CLN3	Q13286	438 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	CTBP1	Q13363	440 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	BMPR2	Q13873	1038 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	NFATC4	Q14934	902 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	ALG11	Q2TAA5	492 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	WSCD2	Q2TBF2	565 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	HSP90B2P	Q58FF3	399 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	ZNF470	Q6ECI4	717 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	ADGRD1	Q6QNK2	874 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	PACS1	Q6VY07	963 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	CROCCP2	Q86T23	111 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	SLC26A11	Q86WA9	606 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	GKN2	Q86XP6	184 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	HID1	Q8IV36	788 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	DENND6A	Q8IWF6	608 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	KY	Q8NBH2	561 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	HCAR2	Q8TDS4	363 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	CCDC74A	Q96AQ1	378 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	MED8	Q96G25	268 aa		12.51	□□□□□ -0.41

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